About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr86996
transcription start site region 86996
MGI:6014763

<< first < prev1 next > last >>
Showing SNP(s) 1 - 77 of 77

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586848169
MGI SNP Detail
Chr9:107443155 Gm9917 within coordinates of
Tssr86996 1947 bp upstream
Tusc2 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251453346
MGI SNP Detail
Chr9:107443238 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1864 bp upstream
Tusc2 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221606694
MGI SNP Detail
Chr9:107443260 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1842 bp upstream
Tusc2 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234676982
MGI SNP Detail
Chr9:107443270 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1832 bp upstream
Tusc2 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253511077
MGI SNP Detail
Chr9:107443315 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1787 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580987142
MGI SNP Detail
Chr9:107443324 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1778 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263525531
MGI SNP Detail
Chr9:107443440 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1662 bp upstream
SNP C C C
rs47641934
MGI SNP Detail
Chr9:107443442 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1660 bp upstream
SNP A/C C A C C
rs254688389
MGI SNP Detail
Chr9:107443465 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1637 bp upstream
SNP T T T
rs584710739
MGI SNP Detail
Chr9:107443638 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1464 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51104338
MGI SNP Detail
Chr9:107443652 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1450 bp upstream
SNP C/G C C G C C
rs49025345
MGI SNP Detail
Chr9:107443748 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1354 bp upstream
SNP A A A A A
rs48477595
MGI SNP Detail
Chr9:107443763 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1339 bp upstream
SNP C/T T T C C T
rs47441479
MGI SNP Detail
Chr9:107443780 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1322 bp upstream
SNP C/T T T C T T
rs46145454
MGI SNP Detail
Chr9:107443806 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1296 bp upstream
SNP A/C A A C C A
rs49816999
MGI SNP Detail
Chr9:107443809 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1293 bp upstream
SNP C/T T T C C T
rs51707240
MGI SNP Detail
Chr9:107443827 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1275 bp upstream
SNP A A A A A
rs587222081
MGI SNP Detail
Chr9:107443838 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1264 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs47921353
MGI SNP Detail
Chr9:107443922 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1180 bp upstream
SNP A/G G G A A G
rs46687878
MGI SNP Detail
Chr9:107443951 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1151 bp upstream
SNP A/G G G A A G
rs46059253
MGI SNP Detail
Chr9:107443965 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1137 bp upstream
SNP C/T T T C T T
rs232264012
MGI SNP Detail
Chr9:107444043 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1059 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs245410536
MGI SNP Detail
Chr9:107444139 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 963 bp upstream
Tssr91397 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49150582
MGI SNP Detail
Chr9:107444143 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 959 bp upstream
Tssr91397 within coordinates of
SNP C/T C C T C C
rs234642115
MGI SNP Detail
Chr9:107444144 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 958 bp upstream
Tssr91397 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264370941
MGI SNP Detail
Chr9:107444156 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 946 bp upstream
Tssr91397 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212353303
MGI SNP Detail
Chr9:107444180 Rr205696 within coordinates of
Tssr86996 922 bp upstream
Tssr91397 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581698208
MGI SNP Detail
Chr9:107444241 Rr205696 within coordinates of
Tssr86996 861 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs46817353
MGI SNP Detail
Chr9:107444314 Rr205696 within coordinates of
Tssr86996 788 bp upstream
SNP A/C C A C C
rs50908264
MGI SNP Detail
Chr9:107444416 Rr205696 within coordinates of
Tssr86996 686 bp upstream
SNP C/T T T C T T
rs222719327
MGI SNP Detail
Chr9:107444473 Rr205696 within coordinates of
Tssr86996 629 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs48389512
MGI SNP Detail
Chr9:107444505 Rr205696 within coordinates of
Tssr86996 597 bp upstream
SNP A/G G G A G A
rs51516429
MGI SNP Detail
Chr9:107444506 Rr205696 within coordinates of
Tssr86996 596 bp upstream
SNP G/T T T G T G
rs49566196
MGI SNP Detail
Chr9:107444551 Rr205696 within coordinates of
Tssr86996 551 bp upstream
SNP C/G C C G
rs50863578
MGI SNP Detail
Chr9:107444558 Rr205696 within coordinates of
Tssr86996 544 bp upstream
SNP A/G A A G
rs49049574
MGI SNP Detail
Chr9:107444561 Rr205696 within coordinates of
Tssr86996 541 bp upstream
SNP C/T T T C
rs228682676
MGI SNP Detail
Chr9:107444573 Rr205696 within coordinates of
Tssr86996 529 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50584244
MGI SNP Detail
Chr9:107444633 Rr205696 within coordinates of
Tssr86996 469 bp upstream
SNP C/T T T C T T
rs46031800
MGI SNP Detail
Chr9:107444662 Rr205696 within coordinates of
Tssr86996 440 bp upstream
SNP C/T C C T
rs48282265
MGI SNP Detail
Chr9:107444668 Rr205696 within coordinates of
Tssr86996 434 bp upstream
SNP C/T C C T
rs48452167
MGI SNP Detail
Chr9:107444669 Rr205696 within coordinates of
Tssr86996 433 bp upstream
SNP A/G A A G
rs45816333
MGI SNP Detail
Chr9:107444735 Rr205696 within coordinates of
Tssr86996 367 bp upstream
SNP A/G A G G A
rs216044811
MGI SNP Detail
Chr9:107444841 Rr205696 within coordinates of
Tssr86996 261 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs48276750
MGI SNP Detail
Chr9:107444844 Rr205696 within coordinates of
Tssr86996 258 bp upstream
SNP A/T T A T T
rs29887661
MGI SNP Detail
Chr9:107444945 Rr205696 within coordinates of
Tssr86996 157 bp upstream
SNP A/G G A G G
rs108109497
MGI SNP Detail
Chr9:107445030 Rr205696 within coordinates of
Tssr86996 72 bp upstream
SNP A/G A G A G
rs235697075
MGI SNP Detail
Chr9:107445050 Rr205696 within coordinates of
Tssr86996 52 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs30220169
MGI SNP Detail
Chr9:107445057 Rr205696 within coordinates of
Tssr86996 45 bp upstream
SNP A/G G A A G G
rs578365890
MGI SNP Detail
Chr9:107445203 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 63 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs214803847
MGI SNP Detail
Chr9:107445347 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 207 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581980465
MGI SNP Detail
Chr9:107445359 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 219 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs30139688
MGI SNP Detail
Chr9:107445398 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 258 bp downstream
SNP A/G G G A A G G
rs30238886
MGI SNP Detail
Chr9:107445462 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 322 bp downstream
SNP C/T C C T T C C
rs30077500
MGI SNP Detail
Chr9:107445544 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 404 bp downstream
SNP C/T T T C C T T
rs33701966
MGI SNP Detail
Chr9:107445553 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 413 bp downstream
SNP C/T C C T T
rs255355949
MGI SNP Detail
Chr9:107445576 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 436 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs30280220
MGI SNP Detail
Chr9:107445684 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 544 bp downstream
SNP C/T C C T T
rs48865547
MGI SNP Detail
Chr9:107445740 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 600 bp downstream
SNP A/G A A G
rs30525486
MGI SNP Detail
Chr9:107445746 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 606 bp downstream
SNP A/G G G A A
rs30394491
MGI SNP Detail
Chr9:107445759 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 619 bp downstream
SNP C/T T T C C
rs584106018
MGI SNP Detail
Chr9:107445954 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 814 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265278217
MGI SNP Detail
Chr9:107445978 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 838 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29742810
MGI SNP Detail
Chr9:107445986 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 846 bp downstream
SNP A/C A A C C
rs29919148
MGI SNP Detail
Chr9:107446117 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 977 bp downstream
SNP A/G G A A G G
rs578624676
MGI SNP Detail
Chr9:107446147 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 1007 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258196866
MGI SNP Detail
Chr9:107446166 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 1026 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30290985
MGI SNP Detail
Chr9:107446275 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1135 bp downstream
SNP A/C A A C C A A
rs582102678
MGI SNP Detail
Chr9:107446494 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1354 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586027962
MGI SNP Detail
Chr9:107446499 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1359 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260359067
MGI SNP Detail
Chr9:107446588 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1448 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs212226693
MGI SNP Detail
Chr9:107446646 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1506 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229568949
MGI SNP Detail
Chr9:107446770 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1630 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29840857
MGI SNP Detail
Chr9:107446827 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1687 bp downstream
SNP C/G G C C G G
rs214717190
MGI SNP Detail
Chr9:107446873 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1733 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234374562
MGI SNP Detail
Chr9:107446917 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1777 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29879887
MGI SNP Detail
Chr9:107447042 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1902 bp downstream
SNP C/T T C C T T
rs580291976
MGI SNP Detail
Chr9:107447061 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1921 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 77 of 77

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory