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Mouse SNP Summary
Symbol
Name
ID 		Tssr86996
transcription start site region 86996
MGI:6014763

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586848169
MGI SNP Detail		 Chr9:107443155 Gm9917 within coordinates of
Tssr86996 1947 bp upstream
Tusc2 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251453346
MGI SNP Detail		 Chr9:107443238 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1864 bp upstream
Tusc2 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221606694
MGI SNP Detail		 Chr9:107443260 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1842 bp upstream
Tusc2 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234676982
MGI SNP Detail		 Chr9:107443270 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1832 bp upstream
Tusc2 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253511077
MGI SNP Detail		 Chr9:107443315 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1787 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580987142
MGI SNP Detail		 Chr9:107443324 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1778 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263525531
MGI SNP Detail		 Chr9:107443440 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1662 bp upstream
 SNP C C C
rs47641934
MGI SNP Detail		 Chr9:107443442 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1660 bp upstream
 SNP A/C C A C C
rs254688389
MGI SNP Detail		 Chr9:107443465 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1637 bp upstream
 SNP T T T
rs584710739
MGI SNP Detail		 Chr9:107443638 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1464 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs51104338
MGI SNP Detail		 Chr9:107443652 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1450 bp upstream
 SNP C/G C C G C C
rs49025345
MGI SNP Detail		 Chr9:107443748 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1354 bp upstream
 SNP A A A A A
rs48477595
MGI SNP Detail		 Chr9:107443763 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1339 bp upstream
 SNP C/T T T C C T
rs47441479
MGI SNP Detail		 Chr9:107443780 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1322 bp upstream
 SNP C/T T T C T T
rs46145454
MGI SNP Detail		 Chr9:107443806 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1296 bp upstream
 SNP A/C A A C C A
rs49816999
MGI SNP Detail		 Chr9:107443809 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1293 bp upstream
 SNP C/T T T C C T
rs51707240
MGI SNP Detail		 Chr9:107443827 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1275 bp upstream
 SNP A A A A A
rs587222081
MGI SNP Detail		 Chr9:107443838 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1264 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs47921353
MGI SNP Detail		 Chr9:107443922 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1180 bp upstream
 SNP A/G G G A A G
rs46687878
MGI SNP Detail		 Chr9:107443951 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1151 bp upstream
 SNP A/G G G A A G
rs46059253
MGI SNP Detail		 Chr9:107443965 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1137 bp upstream
 SNP C/T T T C T T
rs232264012
MGI SNP Detail		 Chr9:107444043 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 1059 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs245410536
MGI SNP Detail		 Chr9:107444139 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 963 bp upstream
Tssr91397 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49150582
MGI SNP Detail		 Chr9:107444143 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 959 bp upstream
Tssr91397 within coordinates of
 SNP C/T C C T C C
rs234642115
MGI SNP Detail		 Chr9:107444144 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 958 bp upstream
Tssr91397 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264370941
MGI SNP Detail		 Chr9:107444156 Gm9917 within coordinates of
Rr205696 within coordinates of
Tssr86996 946 bp upstream
Tssr91397 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212353303
MGI SNP Detail		 Chr9:107444180 Rr205696 within coordinates of
Tssr86996 922 bp upstream
Tssr91397 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581698208
MGI SNP Detail		 Chr9:107444241 Rr205696 within coordinates of
Tssr86996 861 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs46817353
MGI SNP Detail		 Chr9:107444314 Rr205696 within coordinates of
Tssr86996 788 bp upstream
 SNP A/C C A C C
rs50908264
MGI SNP Detail		 Chr9:107444416 Rr205696 within coordinates of
Tssr86996 686 bp upstream
 SNP C/T T T C T T
rs222719327
MGI SNP Detail		 Chr9:107444473 Rr205696 within coordinates of
Tssr86996 629 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs48389512
MGI SNP Detail		 Chr9:107444505 Rr205696 within coordinates of
Tssr86996 597 bp upstream
 SNP A/G G G A G A
rs51516429
MGI SNP Detail		 Chr9:107444506 Rr205696 within coordinates of
Tssr86996 596 bp upstream
 SNP G/T T T G T G
rs49566196
MGI SNP Detail		 Chr9:107444551 Rr205696 within coordinates of
Tssr86996 551 bp upstream
 SNP C/G C C G
rs50863578
MGI SNP Detail		 Chr9:107444558 Rr205696 within coordinates of
Tssr86996 544 bp upstream
 SNP A/G A A G
rs49049574
MGI SNP Detail		 Chr9:107444561 Rr205696 within coordinates of
Tssr86996 541 bp upstream
 SNP C/T T T C
rs228682676
MGI SNP Detail		 Chr9:107444573 Rr205696 within coordinates of
Tssr86996 529 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50584244
MGI SNP Detail		 Chr9:107444633 Rr205696 within coordinates of
Tssr86996 469 bp upstream
 SNP C/T T T C T T
rs46031800
MGI SNP Detail		 Chr9:107444662 Rr205696 within coordinates of
Tssr86996 440 bp upstream
 SNP C/T C C T
rs48282265
MGI SNP Detail		 Chr9:107444668 Rr205696 within coordinates of
Tssr86996 434 bp upstream
 SNP C/T C C T
rs48452167
MGI SNP Detail		 Chr9:107444669 Rr205696 within coordinates of
Tssr86996 433 bp upstream
 SNP A/G A A G
rs45816333
MGI SNP Detail		 Chr9:107444735 Rr205696 within coordinates of
Tssr86996 367 bp upstream
 SNP A/G A G G A
rs216044811
MGI SNP Detail		 Chr9:107444841 Rr205696 within coordinates of
Tssr86996 261 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs48276750
MGI SNP Detail		 Chr9:107444844 Rr205696 within coordinates of
Tssr86996 258 bp upstream
 SNP A/T T A T T
rs29887661
MGI SNP Detail		 Chr9:107444945 Rr205696 within coordinates of
Tssr86996 157 bp upstream
 SNP A/G G A G G
rs108109497
MGI SNP Detail		 Chr9:107445030 Rr205696 within coordinates of
Tssr86996 72 bp upstream
 SNP A/G A G A G
rs235697075
MGI SNP Detail		 Chr9:107445050 Rr205696 within coordinates of
Tssr86996 52 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs30220169
MGI SNP Detail		 Chr9:107445057 Rr205696 within coordinates of
Tssr86996 45 bp upstream
 SNP A/G G A A G G
rs578365890
MGI SNP Detail		 Chr9:107445203 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 63 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs214803847
MGI SNP Detail		 Chr9:107445347 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 207 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581980465
MGI SNP Detail		 Chr9:107445359 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 219 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs30139688
MGI SNP Detail		 Chr9:107445398 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 258 bp downstream
 SNP A/G G G A A G G
rs30238886
MGI SNP Detail		 Chr9:107445462 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 322 bp downstream
 SNP C/T C C T T C C
rs30077500
MGI SNP Detail		 Chr9:107445544 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 404 bp downstream
 SNP C/T T T C C T T
rs33701966
MGI SNP Detail		 Chr9:107445553 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 413 bp downstream
 SNP C/T C C T T
rs255355949
MGI SNP Detail		 Chr9:107445576 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 436 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs30280220
MGI SNP Detail		 Chr9:107445684 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 544 bp downstream
 SNP C/T C C T T
rs48865547
MGI SNP Detail		 Chr9:107445740 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 600 bp downstream
 SNP A/G A A G
rs30525486
MGI SNP Detail		 Chr9:107445746 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 606 bp downstream
 SNP A/G G G A A
rs30394491
MGI SNP Detail		 Chr9:107445759 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 619 bp downstream
 SNP C/T T T C C
rs584106018
MGI SNP Detail		 Chr9:107445954 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 814 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265278217
MGI SNP Detail		 Chr9:107445978 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 838 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29742810
MGI SNP Detail		 Chr9:107445986 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 846 bp downstream
 SNP A/C A A C C
rs29919148
MGI SNP Detail		 Chr9:107446117 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 977 bp downstream
 SNP A/G G A A G G
rs578624676
MGI SNP Detail		 Chr9:107446147 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 1007 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258196866
MGI SNP Detail		 Chr9:107446166 Hyal2 within coordinates of
Rr205696 within coordinates of
Rr368856 within coordinates of
Tssr86996 1026 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30290985
MGI SNP Detail		 Chr9:107446275 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1135 bp downstream
 SNP A/C A A C C A A
rs582102678
MGI SNP Detail		 Chr9:107446494 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1354 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586027962
MGI SNP Detail		 Chr9:107446499 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1359 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260359067
MGI SNP Detail		 Chr9:107446588 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1448 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs212226693
MGI SNP Detail		 Chr9:107446646 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1506 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229568949
MGI SNP Detail		 Chr9:107446770 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1630 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29840857
MGI SNP Detail		 Chr9:107446827 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1687 bp downstream
 SNP C/G G C C G G
rs214717190
MGI SNP Detail		 Chr9:107446873 Cpgi22295 within coordinates of
Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1733 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234374562
MGI SNP Detail		 Chr9:107446917 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1777 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29879887
MGI SNP Detail		 Chr9:107447042 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1902 bp downstream
 SNP C/T T C C T T
rs580291976
MGI SNP Detail		 Chr9:107447061 Hyal2 within coordinates of
Rr205696 within coordinates of
Tssr86996 1921 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 77 of 77
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory