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Mouse SNP Summary
Symbol
Name
ID
Tssr87038
transcription start site region 87038
MGI:6014805

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49998971
MGI SNP Detail
Alliance Variant
Chr9:107847343 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1956 bp upstream
SNP G/T T T T G
rs49561280
MGI SNP Detail
Alliance Variant
Chr9:107847345 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1954 bp upstream
SNP T T
rs263667149
MGI SNP Detail
Alliance Variant
Chr9:107847434 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1865 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs226377398
MGI SNP Detail
Alliance Variant
Chr9:107847484 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1815 bp upstream
SNP A/C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229817002
MGI SNP Detail
Alliance Variant
Chr9:107847507 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1792 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33276912
MGI SNP Detail
Alliance Variant
Chr9:107847516 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1783 bp upstream
SNP A/G G G G G G G A G G G A G G A
rs219550020
MGI SNP Detail
Alliance Variant
Chr9:107847646 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1653 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239726375
MGI SNP Detail
Alliance Variant
Chr9:107847834 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1465 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259053932
MGI SNP Detail
Alliance Variant
Chr9:107848053 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1246 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G
rs224324765
MGI SNP Detail
Alliance Variant
Chr9:107848074 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1225 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246471148
MGI SNP Detail
Alliance Variant
Chr9:107848101 Traip Intron
Traip Noncoding-Transcript-Variant
Tssr87038 1198 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265974298
MGI SNP Detail
Alliance Variant
Chr9:107848182 Traip Coding-NonSynonymous
Traip Noncoding-Transcript-Variant
Tssr87038 1117 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33277974
MGI SNP Detail
Alliance Variant
Chr9:107848283 Traip Coding-Synonymous
Traip Noncoding-Transcript-Variant
Tssr87038 1016 bp upstream
SNP C/T C C C C C C T C C C T C C T C
rs33277976
MGI SNP Detail
Alliance Variant
Chr9:107848322 Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 977 bp upstream
SNP C/T T T T T T T C T T T T T T T T
rs585782008
MGI SNP Detail
Alliance Variant
Chr9:107848369 Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 930 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580384348
MGI SNP Detail
Alliance Variant
Chr9:107848379 Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 920 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254916933
MGI SNP Detail
Alliance Variant
Chr9:107848412 Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 887 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225591373
MGI SNP Detail
Alliance Variant
Chr9:107848551 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 748 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33277978
MGI SNP Detail
Alliance Variant
Chr9:107848607 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 692 bp upstream
SNP G/T G G G G G G T G G G T G G T G
rs216148862
MGI SNP Detail
Alliance Variant
Chr9:107848881 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 418 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240609161
MGI SNP Detail
Alliance Variant
Chr9:107848899 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 400 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs253591010
MGI SNP Detail
Alliance Variant
Chr9:107849062 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 237 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A A G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs218826091
MGI SNP Detail
Alliance Variant
Chr9:107849065 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 234 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G G T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs30180516
MGI SNP Detail
Alliance Variant
Chr9:107849071 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 228 bp upstream
SNP A/G A A G A G G G G A A G A G G A
rs250189965
MGI SNP Detail
Alliance Variant
Chr9:107849084 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 215 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C C T C T T T T C T T T T C T T T T T T C T T T T T T T T T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213560755
MGI SNP Detail
Alliance Variant
Chr9:107849150 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 149 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T T A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs232611540
MGI SNP Detail
Alliance Variant
Chr9:107849334 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 21 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262899336
MGI SNP Detail
Alliance Variant
Chr9:107849352 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 39 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs224915804
MGI SNP Detail
Alliance Variant
Chr9:107849361 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 48 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C C A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs249212145
MGI SNP Detail
Alliance Variant
Chr9:107849385 Rr686670 within coordinates of
Traip mRNA-UTR
Traip Noncoding-Transcript-Variant
Tssr87038 72 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs260292769
MGI SNP Detail
Chr9:107849474 Rr686670 within coordinates of
Tssr87038 161 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G C G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
rs33277981
MGI SNP Detail
Chr9:107849547 Rr686670 within coordinates of
Tssr87038 234 bp downstream
SNP C/T T T T T T T C T T T T T T T T
rs236089454
MGI SNP Detail
Chr9:107849552 Rr686670 within coordinates of
Tssr87038 239 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254763942
MGI SNP Detail
Chr9:107849570 Rr686670 within coordinates of
Tssr87038 257 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs225630693
MGI SNP Detail
Chr9:107849582 Rr686670 within coordinates of
Rr686671 within coordinates of
Tssr87038 269 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238631414
MGI SNP Detail
Chr9:107849713 Rr686670 within coordinates of
Tssr87038 400 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583931269
MGI SNP Detail
Chr9:107849824 Rr686670 within coordinates of
Tssr87038 511 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G C G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G
rs265607366
MGI SNP Detail
Chr9:107849828 Rr686670 within coordinates of
Tssr87038 515 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G G A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs587478102
MGI SNP Detail
Chr9:107849829 Rr686670 within coordinates of
Tssr87038 516 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs232688618
MGI SNP Detail
Chr9:107849843 Rr686670 within coordinates of
Tssr87038 530 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A A G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs258843695
MGI SNP Detail
Chr9:107849884 Rr686670 within coordinates of
Tssr87038 571 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218792600
MGI SNP Detail
Chr9:107849897 Rr686670 within coordinates of
Tssr87038 584 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs223901274
MGI SNP Detail
Chr9:107849961 Rr686670 within coordinates of
Tssr87038 648 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C
rs244088363
MGI SNP Detail
Chr9:107849963 Rr686670 within coordinates of
Tssr87038 650 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T A A T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs213412858
MGI SNP Detail
Chr9:107849994 Rr686670 within coordinates of
Tssr87038 681 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33277983
MGI SNP Detail
Chr9:107850095 Tssr87038 782 bp downstream
SNP C/G G G G G G C G G G C G G C G
rs258482797
MGI SNP Detail
Chr9:107850098 Tssr87038 785 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G G A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs217128127
MGI SNP Detail
Chr9:107850148 Tssr87038 835 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs239509890
MGI SNP Detail
Chr9:107850187 Tssr87038 874 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs264199930
MGI SNP Detail
Chr9:107850291 Tssr87038 978 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G G A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33278915
MGI SNP Detail
Chr9:107850337 Tssr87038 1024 bp downstream
SNP C/T T T T T T T C T T T T T C T
rs235925857
MGI SNP Detail
Chr9:107850368 Tssr87038 1055 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G
rs249090933
MGI SNP Detail
Chr9:107850378 Tssr87038 1065 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs583178361
MGI SNP Detail
Chr9:107850388 Tssr87038 1075 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs586929617
MGI SNP Detail
Chr9:107850389 Tssr87038 1076 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33278917
MGI SNP Detail
Chr9:107850457 Tssr87038 1144 bp downstream
SNP C/T T T T T T T C T T T C T T C T
rs33278919
MGI SNP Detail
Chr9:107850519 Tssr87038 1206 bp downstream
SNP A/G A A A A A A G A A A G A A G A
rs263292278
MGI SNP Detail
Chr9:107850580 Tssr87038 1267 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs233437792
MGI SNP Detail
Chr9:107850647 Tssr87038 1334 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29917458
MGI SNP Detail
Chr9:107850654 Tssr87038 1341 bp downstream
SNP C/G C G G C
rs261545210
MGI SNP Detail
Chr9:107850677 Tssr87038 1364 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223933516
MGI SNP Detail
Chr9:107850712 Tssr87038 1399 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243942669
MGI SNP Detail
Chr9:107850845 Tssr87038 1532 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs213445734
MGI SNP Detail
Chr9:107850873 Tssr87038 1560 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226303771
MGI SNP Detail
Chr9:107850943 Tssr87038 1630 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256968421
MGI SNP Detail
Chr9:107850957 Tssr87038 1644 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29633538
MGI SNP Detail
Chr9:107851011 Tssr87038 1698 bp downstream
SNP C/T T T C C T
rs241916079
MGI SNP Detail
Chr9:107851015 Tssr87038 1702 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254717629
MGI SNP Detail
Chr9:107851106 Tssr87038 1793 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29838676
MGI SNP Detail
Chr9:107851208 Tssr87038 1895 bp downstream
SNP A/C C C A
rs212014914
MGI SNP Detail
Chr9:107851279 Tssr87038 1966 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230080799
MGI SNP Detail
Chr9:107851286 Tssr87038 1973 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs248951338
MGI SNP Detail
Chr9:107851311 Tssr87038 1998 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
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Showing SNP(s) 1 - 73 of 73

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory