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Mouse SNP Summary
Symbol
Name
ID 		Tssr87398
transcription start site region 87398
MGI:6015165

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249962274
MGI SNP Detail		 Chr9:110483670 Tssr87398 1864 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580696519
MGI SNP Detail		 Chr9:110483699 Tssr87398 1835 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264440455
MGI SNP Detail		 Chr9:110483743 Tssr87398 1791 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218131675
MGI SNP Detail		 Chr9:110483858 Gm69744 within coordinates of
Tssr87398 1676 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216872845
MGI SNP Detail		 Chr9:110483980 Gm69744 within coordinates of
Tssr87398 1554 bp upstream
 SNP C/T C T
rs257187827
MGI SNP Detail		 Chr9:110484085 Gm69744 within coordinates of
Tssr87398 1449 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs226372924
MGI SNP Detail		 Chr9:110484115 Gm69744 within coordinates of
Tssr87398 1419 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239843869
MGI SNP Detail		 Chr9:110484150 Gm69744 within coordinates of
Tssr87398 1384 bp upstream
 SNP A/G G A
rs265651588
MGI SNP Detail		 Chr9:110484195 Gm69744 within coordinates of
Tssr87398 1339 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232660257
MGI SNP Detail		 Chr9:110484238 Gm69744 within coordinates of
Tssr87398 1296 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259498393
MGI SNP Detail		 Chr9:110484239 Gm69744 within coordinates of
Tssr87398 1295 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs217628347
MGI SNP Detail		 Chr9:110484264 Gm69744 within coordinates of
Tssr87398 1270 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230301781
MGI SNP Detail		 Chr9:110484549 Gm69744 within coordinates of
Tssr87398 985 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243152189
MGI SNP Detail		 Chr9:110484553 Gm69744 within coordinates of
Tssr87398 981 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6175057
MGI SNP Detail		 Chr9:110484568 Gm69744 within coordinates of
Tssr87398 966 bp upstream
 SNP G/T T G T G
rs239207827
MGI SNP Detail		 Chr9:110484625 Gm69744 within coordinates of
Tssr87398 909 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258848693
MGI SNP Detail		 Chr9:110484628 Gm69744 within coordinates of
Tssr87398 906 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225401114
MGI SNP Detail		 Chr9:110484636 Gm69744 within coordinates of
Tssr87398 898 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584225087
MGI SNP Detail		 Chr9:110484700 Gm69744 within coordinates of
Tssr87398 834 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239405910
MGI SNP Detail		 Chr9:110484728 Gm69744 within coordinates of
Tssr87398 806 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578714860
MGI SNP Detail		 Chr9:110484771 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 763 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264125553
MGI SNP Detail		 Chr9:110484813 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 721 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs6189046
MGI SNP Detail		 Chr9:110484846 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 688 bp upstream
 SNP A/G G A
rs238013290
MGI SNP Detail		 Chr9:110484893 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 641 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257244227
MGI SNP Detail		 Chr9:110484951 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 583 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220005533
MGI SNP Detail		 Chr9:110484985 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 549 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs247390029
MGI SNP Detail		 Chr9:110485003 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 531 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263477562
MGI SNP Detail		 Chr9:110485027 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 507 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30179325
MGI SNP Detail		 Chr9:110485064 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 470 bp upstream
 SNP A/T A A T A A A
rs254197374
MGI SNP Detail		 Chr9:110485112 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 422 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260102036
MGI SNP Detail		 Chr9:110485118 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 416 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs223880634
MGI SNP Detail		 Chr9:110485219 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 315 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C T C C C C C C C C C C C C C C C C C C C
rs243389972
MGI SNP Detail		 Chr9:110485305 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 229 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582212981
MGI SNP Detail		 Chr9:110485325 Gm42470 within coordinates of
Gm69744 within coordinates of
Tssr87398 209 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213978339
MGI SNP Detail		 Chr9:110485421 Cpgi22386 within coordinates of
Gm42470 within coordinates of
Gm69744 within coordinates of
Rr401702 within coordinates of
Tssr87398 113 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33659955
MGI SNP Detail		 Chr9:110485494 Cpgi22386 within coordinates of
Gm42470 within coordinates of
Gm69744 within coordinates of
Rr401702 within coordinates of
Tssr87398 40 bp upstream
 SNP C/T C T C C C
rs257331719
MGI SNP Detail		 Chr9:110485561 Cpgi22386 within coordinates of
Gm69744 within coordinates of
Rr401702 within coordinates of
Tssr87398 16 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216948502
MGI SNP Detail		 Chr9:110485570 Cpgi22386 within coordinates of
Gm69744 within coordinates of
Rr401702 within coordinates of
Tssr87398 25 bp downstream
Tssr87399 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs242250695
MGI SNP Detail		 Chr9:110485576 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Gm69744 within coordinates of
Rr401702 within coordinates of
Tssr87398 31 bp downstream
Tssr87399 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255171478
MGI SNP Detail		 Chr9:110485600 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Gm69744 within coordinates of
Rr401702 within coordinates of
Tssr87398 55 bp downstream
Tssr87399 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A G G A G A A A A G A A A A G A A A A A A G A A A A A A G A A A A
rs211905040
MGI SNP Detail		 Chr9:110485640 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Gm69744 within coordinates of
Rr401702 within coordinates of
Tssr87398 95 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230467867
MGI SNP Detail		 Chr9:110485755 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Gm69744 within coordinates of
Tssr87398 210 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251221571
MGI SNP Detail		 Chr9:110485760 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Gm69744 within coordinates of
Tssr87398 215 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs223114344
MGI SNP Detail		 Chr9:110485862 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Tssr87398 317 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244834774
MGI SNP Detail		 Chr9:110485863 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Tssr87398 318 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263143034
MGI SNP Detail		 Chr9:110486004 Ccdc12 within coordinates of
Cpgi22386 within coordinates of
Tssr87398 459 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225539587
MGI SNP Detail		 Chr9:110486036 Ccdc12 within coordinates of
Tssr87398 491 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs250875826
MGI SNP Detail		 Chr9:110486051 Ccdc12 within coordinates of
Tssr87398 506 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260161815
MGI SNP Detail		 Chr9:110486061 Ccdc12 within coordinates of
Tssr87398 516 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs223759237
MGI SNP Detail		 Chr9:110486126 Ccdc12 within coordinates of
Tssr87398 581 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236949740
MGI SNP Detail		 Chr9:110486247 Ccdc12 within coordinates of
Tssr87398 702 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255865538
MGI SNP Detail		 Chr9:110486263 Ccdc12 within coordinates of
Tssr87398 718 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231571724
MGI SNP Detail		 Chr9:110486292 Ccdc12 within coordinates of
Tssr87398 747 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs252343804
MGI SNP Detail		 Chr9:110486303 Ccdc12 within coordinates of
Tssr87398 758 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs217229490
MGI SNP Detail		 Chr9:110486378 Ccdc12 within coordinates of
Tssr87398 833 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233296425
MGI SNP Detail		 Chr9:110486499 Ccdc12 within coordinates of
Tssr87398 954 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs251099399
MGI SNP Detail		 Chr9:110486735 Ccdc12 within coordinates of
Tssr87398 1190 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs214746820
MGI SNP Detail		 Chr9:110486797 Ccdc12 within coordinates of
Tssr87398 1252 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29641338
MGI SNP Detail		 Chr9:110486903 Ccdc12 within coordinates of
Tssr87398 1358 bp downstream
 SNP C/G G C G G G
rs259116462
MGI SNP Detail		 Chr9:110486931 Ccdc12 within coordinates of
Tssr87398 1386 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225733246
MGI SNP Detail		 Chr9:110486986 Ccdc12 within coordinates of
Tssr87398 1441 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218459747
MGI SNP Detail		 Chr9:110487122 Ccdc12 within coordinates of
Tssr87398 1577 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236985078
MGI SNP Detail		 Chr9:110487149 Ccdc12 within coordinates of
Tssr87398 1604 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs255656392
MGI SNP Detail		 Chr9:110487166 Ccdc12 within coordinates of
Tssr87398 1621 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231285845
MGI SNP Detail		 Chr9:110487244 Ccdc12 within coordinates of
Tssr87398 1699 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248351923
MGI SNP Detail		 Chr9:110487266 Ccdc12 within coordinates of
Tssr87398 1721 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G
rs263813596
MGI SNP Detail		 Chr9:110487398 Ccdc12 within coordinates of
Tssr87398 1853 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234201269
MGI SNP Detail		 Chr9:110487497 Ccdc12 within coordinates of
Tssr87398 1952 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248882337
MGI SNP Detail		 Chr9:110487515 Ccdc12 within coordinates of
Tssr87398 1970 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 69 of 69
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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