About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr88446
transcription start site region 88446
MGI:6016213

<< first < prev1 next > last >>
Showing SNP(s) 1 - 70 of 70

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237587557
MGI SNP Detail		 Chr9:21934132 Elavl3 within coordinates of
Tssr88446 1898 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263205845
MGI SNP Detail		 Chr9:21934201 Elavl3 within coordinates of
Tssr88446 1829 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213540417
MGI SNP Detail		 Chr9:21934213 Elavl3 within coordinates of
Tssr88446 1817 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs232625992
MGI SNP Detail		 Chr9:21934236 Elavl3 within coordinates of
Tssr88446 1794 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs249492723
MGI SNP Detail		 Chr9:21934283 Elavl3 within coordinates of
Tssr88446 1747 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs218823613
MGI SNP Detail		 Chr9:21934552 Elavl3 within coordinates of
Tssr88446 1478 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs241992925
MGI SNP Detail		 Chr9:21934555 Elavl3 within coordinates of
Tssr88446 1475 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255283081
MGI SNP Detail		 Chr9:21934578 Elavl3 within coordinates of
Tssr88446 1452 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs224269132
MGI SNP Detail		 Chr9:21934616 Elavl3 within coordinates of
Tssr88446 1414 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246570151
MGI SNP Detail		 Chr9:21934810 Elavl3 within coordinates of
Tssr88446 1220 bp downstream
 SNP A/G G G G G G G G G A G G G G G G G G G A G G G G G G A G G G A G A A G A G A G A G G G G A A G G G G G A A A
rs265115925
MGI SNP Detail		 Chr9:21934933 Elavl3 within coordinates of
Tssr88446 1097 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231084079
MGI SNP Detail		 Chr9:21935011 Elavl3 within coordinates of
Tssr88446 1019 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236103336
MGI SNP Detail		 Chr9:21935026 Elavl3 within coordinates of
Tssr88446 1004 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254888911
MGI SNP Detail		 Chr9:21935044 Elavl3 within coordinates of
Tssr88446 986 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228809097
MGI SNP Detail		 Chr9:21935110 Elavl3 within coordinates of
Tssr88446 920 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247778041
MGI SNP Detail		 Chr9:21935135 Elavl3 within coordinates of
Tssr88446 895 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216202841
MGI SNP Detail		 Chr9:21935153 Elavl3 within coordinates of
Tssr88446 877 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231734803
MGI SNP Detail		 Chr9:21935174 Elavl3 within coordinates of
Tssr88446 856 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252846932
MGI SNP Detail		 Chr9:21935193 Elavl3 within coordinates of
Tssr88446 837 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213874625
MGI SNP Detail		 Chr9:21935200 Elavl3 within coordinates of
Tssr88446 830 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs232538380
MGI SNP Detail		 Chr9:21935218 Elavl3 within coordinates of
Tssr88446 812 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243378292
MGI SNP Detail		 Chr9:21935264 Elavl3 within coordinates of
Tssr88446 766 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212731368
MGI SNP Detail		 Chr9:21935354 Elavl3 within coordinates of
Tssr88446 676 bp downstream
 SNP A/G G G G G G G G G A G G G G G G G G G A G G G G G G A G G G A G A A G A G A G A G G G G A A G G G G G A G G
rs235453628
MGI SNP Detail		 Chr9:21935395 Elavl3 within coordinates of
Tssr88446 635 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs264202701
MGI SNP Detail		 Chr9:21935399 Elavl3 within coordinates of
Tssr88446 631 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224225195
MGI SNP Detail		 Chr9:21935503 Elavl3 within coordinates of
Tssr88446 527 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241114412
MGI SNP Detail		 Chr9:21935515 Elavl3 within coordinates of
Tssr88446 515 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257158097
MGI SNP Detail		 Chr9:21935542 Elavl3 within coordinates of
Tssr88446 488 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579368440
MGI SNP Detail		 Chr9:21935601 Elavl3 within coordinates of
Tssr88446 429 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223315889
MGI SNP Detail		 Chr9:21935653 Elavl3 within coordinates of
Tssr88446 377 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578606024
MGI SNP Detail		 Chr9:21935689 Elavl3 within coordinates of
Tssr88446 341 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585185538
MGI SNP Detail		 Chr9:21935695 Elavl3 within coordinates of
Tssr88446 335 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs579102152
MGI SNP Detail		 Chr9:21935696 Elavl3 within coordinates of
Tssr88446 334 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236062629
MGI SNP Detail		 Chr9:21935792 Elavl3 within coordinates of
Tssr88446 238 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582466325
MGI SNP Detail		 Chr9:21935877 Elavl3 within coordinates of
Tssr88446 153 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs254806374
MGI SNP Detail		 Chr9:21935888 Elavl3 within coordinates of
Tssr88446 142 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585443104
MGI SNP Detail		 Chr9:21935894 Elavl3 within coordinates of
Tssr88446 136 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs578577829
MGI SNP Detail		 Chr9:21935896 Elavl3 within coordinates of
Tssr88446 134 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs222168545
MGI SNP Detail		 Chr9:21935899 Elavl3 within coordinates of
Tssr88446 131 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581833385
MGI SNP Detail		 Chr9:21936117 Elavl3 within coordinates of
Tssr88446 55 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241855440
MGI SNP Detail		 Chr9:21936264 Elavl3 within coordinates of
Tssr88446 202 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265599747
MGI SNP Detail		 Chr9:21936333 Elavl3 within coordinates of
Tssr88446 271 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs232730117
MGI SNP Detail		 Chr9:21936403 Elavl3 within coordinates of
Tssr88446 341 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257797829
MGI SNP Detail		 Chr9:21936406 Elavl3 within coordinates of
Tssr88446 344 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs262213237
MGI SNP Detail		 Chr9:21936420 Elavl3 within coordinates of
Tssr88446 358 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226292401
MGI SNP Detail		 Chr9:21936465 Elavl3 within coordinates of
Tssr88446 403 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243297244
MGI SNP Detail		 Chr9:21936663 Elavl3 within coordinates of
Tssr88446 601 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212694370
MGI SNP Detail		 Chr9:21936690 Elavl3 within coordinates of
Tssr88446 628 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs235420905
MGI SNP Detail		 Chr9:21936785 Elavl3 within coordinates of
Tssr88446 723 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs254603196
MGI SNP Detail		 Chr9:21936808 Elavl3 within coordinates of
Tssr88446 746 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216088456
MGI SNP Detail		 Chr9:21936810 Elavl3 within coordinates of
Tssr88446 748 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238680047
MGI SNP Detail		 Chr9:21936842 Elavl3 within coordinates of
Tssr88446 780 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262039955
MGI SNP Detail		 Chr9:21936887 Elavl3 within coordinates of
Tssr88446 825 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs220077478
MGI SNP Detail		 Chr9:21936888 Elavl3 within coordinates of
Tssr88446 826 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230088910
MGI SNP Detail		 Chr9:21936938 Elavl3 within coordinates of
Tssr88446 876 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249062903
MGI SNP Detail		 Chr9:21936964 Elavl3 within coordinates of
Tssr88446 902 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222132426
MGI SNP Detail		 Chr9:21937020 Elavl3 within coordinates of
Tssr88446 958 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251688766
MGI SNP Detail		 Chr9:21937024 Elavl3 within coordinates of
Tssr88446 962 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs263312405
MGI SNP Detail		 Chr9:21937035 Elavl3 within coordinates of
Tssr88446 973 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs225618769
MGI SNP Detail		 Chr9:21937039 Elavl3 within coordinates of
Tssr88446 977 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243592563
MGI SNP Detail		 Chr9:21937080 Elavl3 within coordinates of
Tssr88446 1018 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265398504
MGI SNP Detail		 Chr9:21937150 Elavl3 within coordinates of
Tssr88446 1088 bp upstream
 SNP A/G A A A A A A A A G A A A A A A A A A G A A A A A A G A A A A A G G A G A G A G A A A A G G A A A A A G A A
rs226248337
MGI SNP Detail		 Chr9:21937213 Elavl3 within coordinates of
Tssr88446 1151 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585394865
MGI SNP Detail		 Chr9:21937241 Elavl3 within coordinates of
Tssr88446 1179 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs579536024
MGI SNP Detail		 Chr9:21937270 Elavl3 within coordinates of
Tssr88446 1208 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs243254911
MGI SNP Detail		 Chr9:21937308 Elavl3 within coordinates of
Tssr88446 1246 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256518853
MGI SNP Detail		 Chr9:21937320 Elavl3 within coordinates of
Tssr88446 1258 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228421910
MGI SNP Detail		 Chr9:21937419 Elavl3 within coordinates of
Tssr88446 1357 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259988897
MGI SNP Detail		 Chr9:21937775 Elavl3 within coordinates of
Tssr88446 1713 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215559493
MGI SNP Detail		 Chr9:21938001 Elavl3 within coordinates of
Tssr88446 1939 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
<< first < prev1 next > last >>
Showing SNP(s) 1 - 70 of 70
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...