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Mouse SNP Summary
Symbol
Name
ID 		Tssr89169
transcription start site region 89169
MGI:6016936

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Showing SNP(s) 1 - 75 of 75

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250472052
MGI SNP Detail		 Chr9:44435937 Cxcr5 within coordinates of
Tssr89169 1784 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219719788
MGI SNP Detail		 Chr9:44436107 Cxcr5 within coordinates of
Tssr89169 1614 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32613790
MGI SNP Detail		 Chr9:44436141 Cxcr5 within coordinates of
Tssr89169 1580 bp downstream
 SNP C/T T C C C C C T C C T C T T T
rs32613792
MGI SNP Detail		 Chr9:44436190 Cxcr5 within coordinates of
Tssr89169 1531 bp downstream
 SNP C/T T C C C C C C C T T C T C
rs224837173
MGI SNP Detail		 Chr9:44436233 Cxcr5 within coordinates of
Tssr89169 1488 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs581174636
MGI SNP Detail		 Chr9:44436235 Cxcr5 within coordinates of
Tssr89169 1486 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs32614714
MGI SNP Detail		 Chr9:44436293 Cxcr5 within coordinates of
Tssr89169 1428 bp downstream
 SNP A/G G G G G A G G G G G G G G G
rs32614716
MGI SNP Detail		 Chr9:44436324 Cxcr5 within coordinates of
Tssr89169 1397 bp downstream
 SNP C/T C T C T T T C T C T C C C
rs46181516
MGI SNP Detail		 Chr9:44436365 Cxcr5 within coordinates of
Tssr89169 1356 bp downstream
 SNP A/T T T T A
rs47487925
MGI SNP Detail		 Chr9:44436386 Cxcr5 within coordinates of
Tssr89169 1335 bp downstream
 SNP C/T T T T T C
rs49807381
MGI SNP Detail		 Chr9:44436396 Cxcr5 within coordinates of
Tssr89169 1325 bp downstream
 SNP G G G
rs49396394
MGI SNP Detail		 Chr9:44436409 Cxcr5 within coordinates of
Tssr89169 1312 bp downstream
 SNP C C C C C
rs32614718
MGI SNP Detail		 Chr9:44436423 Cxcr5 within coordinates of
Tssr89169 1298 bp downstream
 SNP C/T C C T C C T T C T C C T C
rs46648428
MGI SNP Detail		 Chr9:44436437 Cxcr5 within coordinates of
Tssr89169 1284 bp downstream
 SNP A/G A G G
rs49277091
MGI SNP Detail		 Chr9:44436477 Cxcr5 within coordinates of
Tssr89169 1244 bp downstream
 SNP G G G G G G
rs259709698
MGI SNP Detail		 Chr9:44436497 Cxcr5 within coordinates of
Tssr89169 1224 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219772119
MGI SNP Detail		 Chr9:44436521 Cxcr5 within coordinates of
Tssr89169 1200 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51741392
MGI SNP Detail		 Chr9:44436548 Cxcr5 within coordinates of
Tssr89169 1173 bp downstream
 SNP A/G G A A A G
rs49457545
MGI SNP Detail		 Chr9:44436566 Cxcr5 within coordinates of
Tssr89169 1155 bp downstream
 SNP A/G A G G G A
rs48402920
MGI SNP Detail		 Chr9:44436600 Cxcr5 within coordinates of
Tssr89169 1121 bp downstream
 SNP C/T C T T T C
rs49612511
MGI SNP Detail		 Chr9:44436657 Cxcr5 within coordinates of
Tssr89169 1064 bp downstream
 SNP A/G G A A G
rs32614720
MGI SNP Detail		 Chr9:44436676 Cxcr5 within coordinates of
Tssr89169 1045 bp downstream
 SNP C/T T T C C C C C C C T C T C
rs225099795
MGI SNP Detail		 Chr9:44436720 Cxcr5 within coordinates of
Tssr89169 1001 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32614722
MGI SNP Detail		 Chr9:44436762 Cxcr5 within coordinates of
Tssr89169 959 bp downstream
 SNP C/T C C C T C C C C C C C C C C T T
rs49822776
MGI SNP Detail		 Chr9:44436799 Cxcr5 within coordinates of
Tssr89169 922 bp downstream
 SNP C/T T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217965117
MGI SNP Detail		 Chr9:44436820 Cxcr5 within coordinates of
Tssr89169 901 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49189444
MGI SNP Detail		 Chr9:44436909 Cxcr5 within coordinates of
Tssr89169 812 bp downstream
 SNP C/T T C C
rs255101896
MGI SNP Detail		 Chr9:44436943 Cxcr5 within coordinates of
Tssr89169 778 bp downstream
 SNP C/T T T T C C C C C C C C C C C C C C C C C C C T C C C C T T C C T C T C C C C C C T C C C C C C C C C C C C
rs225786050
MGI SNP Detail		 Chr9:44436972 Cxcr5 within coordinates of
Tssr89169 749 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs245107338
MGI SNP Detail		 Chr9:44437010 Cxcr5 within coordinates of
Tssr89169 711 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs46942649
MGI SNP Detail		 Chr9:44437159 Cxcr5 within coordinates of
Tssr89169 562 bp downstream
 SNP C/T C T T T T
rs233749610
MGI SNP Detail		 Chr9:44437190 Cxcr5 within coordinates of
Tssr89169 531 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254189539
MGI SNP Detail		 Chr9:44437217 Cxcr5 within coordinates of
Tssr89169 504 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219404359
MGI SNP Detail		 Chr9:44437261 Cxcr5 within coordinates of
Tssr89169 460 bp downstream
 SNP C/T C C C T T T T T T T T T T T T T T T T C T T C T T T T C C T C T C T T T T T T C T T T T T T T C T T T T
rs224583140
MGI SNP Detail		 Chr9:44437318 Cxcr5 within coordinates of
Tssr89169 403 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs32614723
MGI SNP Detail		 Chr9:44437329 Cxcr5 within coordinates of
Tssr89169 392 bp downstream
 SNP C/T C C T C T T T C T T T T C T C C T C
rs32615325
MGI SNP Detail		 Chr9:44437354 Cxcr5 within coordinates of
Tssr89169 367 bp downstream
 SNP C/T C C T T T T T C T T T C T C
rs232935452
MGI SNP Detail		 Chr9:44437434 Cxcr5 within coordinates of
Tssr89169 287 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32615327
MGI SNP Detail		 Chr9:44437523 Cxcr5 within coordinates of
Tssr89169 198 bp downstream
 SNP C/T T C C C C C C C C T C C C
rs3696264
MGI SNP Detail		 Chr9:44437611 Cxcr5 within coordinates of
Tssr89169 110 bp downstream
 SNP C/T C C T C C C T C C T C C C C C C T
rs242277508
MGI SNP Detail		 Chr9:44438466 Tssr89169 729 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260803047
MGI SNP Detail		 Chr9:44438549 Tssr89169 812 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217842293
MGI SNP Detail		 Chr9:44438601 Tssr89169 864 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs33759806
MGI SNP Detail		 Chr9:44438614 Tssr89169 877 bp upstream
 SNP C/T C T C T T T
rs249663385
MGI SNP Detail		 Chr9:44438625 Tssr89169 888 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219822131
MGI SNP Detail		 Chr9:44438655 Tssr89169 918 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244789063
MGI SNP Detail		 Chr9:44438673 Tssr89169 936 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29642506
MGI SNP Detail		 Chr9:44438703 Tssr89169 966 bp upstream
 SNP C/T C C T C C C
rs50213774
MGI SNP Detail		 Chr9:44438765 Tssr89169 1028 bp upstream
 SNP T T T T T
rs50154449
MGI SNP Detail		 Chr9:44438806 Tssr89169 1069 bp upstream
 SNP G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254089692
MGI SNP Detail		 Chr9:44438807 Tssr89169 1070 bp upstream
 SNP T T T
rs224452909
MGI SNP Detail		 Chr9:44438813 Tssr89169 1076 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32615330
MGI SNP Detail		 Chr9:44438830 Tssr89169 1093 bp upstream
 SNP G/T T T G T T T G T T T T T G
rs52086747
MGI SNP Detail		 Chr9:44438905 Tssr89169 1168 bp upstream
 SNP T T T T T
rs52517273
MGI SNP Detail		 Chr9:44438920 Tssr89169 1183 bp upstream
 SNP C C C
rs52139566
MGI SNP Detail		 Chr9:44438926 Tssr89169 1189 bp upstream
 SNP C C
rs52169986
MGI SNP Detail		 Chr9:44438932 Tssr89169 1195 bp upstream
 SNP C C
rs108497666
MGI SNP Detail		 Chr9:44438938 Tssr89169 1201 bp upstream
 SNP C C C
rs584986693
MGI SNP Detail		 Chr9:44438957 Tssr89169 1220 bp upstream
 SNP A/G A A G G A A A G G G G G G G G G G A G A G G A G A A G G G G G A A G G G G A G A G G
rs578583742
MGI SNP Detail		 Chr9:44438964 Tssr89169 1227 bp upstream
 SNP C/G C C G G C C C G C G G G G G G G G G G C G C G G C G G G G G C C G G G G C C G G C G G
rs582389983
MGI SNP Detail		 Chr9:44438970 Tssr89169 1233 bp upstream
 SNP C/G C C C G G C C C G C G G G G G G G G G C G G C C G C G C C G G G G G C C G G G G C C G G C G G
rs584281697
MGI SNP Detail		 Chr9:44438975 Tssr89169 1238 bp upstream
 SNP A/T A A A A T T A A A T A T T T T T T T T T A T A T A A A T A A T A A T T T T A A T T T T A A T A T T
rs217223221
MGI SNP Detail		 Chr9:44439004 Tssr89169 1267 bp upstream
 SNP A/G A A A G G G G G G G G G G G G G G G G A G G A G G G G A A G G A G A G G G G G G A G G G G G G G G G G G G
rs29992525
MGI SNP Detail		 Chr9:44439053 Tssr89169 1316 bp upstream
 SNP A/G G A G A A A
rs264307211
MGI SNP Detail		 Chr9:44439058 Tssr89169 1321 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs211988672
MGI SNP Detail		 Chr9:44439100 Tssr89169 1363 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs51276272
MGI SNP Detail		 Chr9:44439106 Tssr89169 1369 bp upstream
 SNP G G G G G G
rs249530612
MGI SNP Detail		 Chr9:44439197 Tssr89169 1460 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs32615332
MGI SNP Detail		 Chr9:44439218 Tssr89169 1481 bp upstream
 SNP A/G A A A G A A A G A A A A G A G
rs50315074
MGI SNP Detail		 Chr9:44439337 Tssr89169 1600 bp upstream
 SNP A A A A A A
rs29840427
MGI SNP Detail		 Chr9:44439388 Tssr89169 1651 bp upstream
 SNP C/T C C T C T T T C C T T C T C C T C
rs30233150
MGI SNP Detail		 Chr9:44439424 Tssr89169 1687 bp upstream
 SNP A/G A A G G G G G G G A G A A
rs582614992
MGI SNP Detail		 Chr9:44439480 Tssr89169 1743 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255813826
MGI SNP Detail		 Chr9:44439558 Tssr89169 1821 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs30274886
MGI SNP Detail		 Chr9:44439607 Tssr89169 1870 bp upstream
 SNP G/T G G T T T
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Showing SNP(s) 1 - 75 of 75
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory