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Mouse SNP Summary
Symbol
Name
ID 		Tssr89274
transcription start site region 89274
MGI:6017041

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249749821
MGI SNP Detail		 Chr9:45816193 Rnf214 within coordinates of
Tssr89274 1942 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223626148
MGI SNP Detail		 Chr9:45816327 Rnf214 within coordinates of
Tssr89274 1808 bp downstream
 SNP A/C A A A C C C C C C C C C C C C C C C C C C C C C C C C A A C C A C A C C C C C C C C C C C C C C C C C C C
rs242264305
MGI SNP Detail		 Chr9:45816343 Rnf214 within coordinates of
Tssr89274 1792 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260229455
MGI SNP Detail		 Chr9:45816372 Rnf214 within coordinates of
Tssr89274 1763 bp downstream
 SNP A/G A A A G G G G G G G G G G G G G G G G A G G A G G G G A A G G A G A G G G G G G A G G G G G G G G G G G G
rs224548138
MGI SNP Detail		 Chr9:45816386 Rnf214 within coordinates of
Tssr89274 1749 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs247331808
MGI SNP Detail		 Chr9:45816421 Rnf214 within coordinates of
Tssr89274 1714 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs262573920
MGI SNP Detail		 Chr9:45816454 Rnf214 within coordinates of
Tssr89274 1681 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229758866
MGI SNP Detail		 Chr9:45816523 Rnf214 within coordinates of
Tssr89274 1612 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242772911
MGI SNP Detail		 Chr9:45816651 Rnf214 within coordinates of
Tssr89274 1484 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582773344
MGI SNP Detail		 Chr9:45816732 Rnf214 within coordinates of
Tssr89274 1403 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs253660821
MGI SNP Detail		 Chr9:45816811 Rnf214 within coordinates of
Tssr89274 1324 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229071160
MGI SNP Detail		 Chr9:45816846 Rnf214 within coordinates of
Tssr89274 1289 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs29592097
MGI SNP Detail		 Chr9:45817006 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Tssr89274 1129 bp downstream
 SNP A/G A A G G G
rs29787094
MGI SNP Detail		 Chr9:45817053 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 1082 bp downstream
 SNP G/T G G T T T
rs237777403
MGI SNP Detail		 Chr9:45817172 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 963 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs256204884
MGI SNP Detail		 Chr9:45817247 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 888 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213741759
MGI SNP Detail		 Chr9:45817280 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 855 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249737351
MGI SNP Detail		 Chr9:45817425 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 710 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217582735
MGI SNP Detail		 Chr9:45817443 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 692 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs585804112
MGI SNP Detail		 Chr9:45817557 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 578 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs235726317
MGI SNP Detail		 Chr9:45817568 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677992 within coordinates of
Tssr89274 567 bp downstream
 SNP C/T T C C C C C C C C C C C C C T C C C C C C C C T C C C C C C C C C
rs253837978
MGI SNP Detail		 Chr9:45817705 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677993 within coordinates of
Tssr89273 within coordinates of
Tssr89274 430 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224504624
MGI SNP Detail		 Chr9:45817775 Cpgi21697 within coordinates of
Rnf214 within coordinates of
Rr677993 within coordinates of
Tssr89274 360 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs244477595
MGI SNP Detail		 Chr9:45817844 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rnf214 within coordinates of
Rr677995 within coordinates of
Tssr84815 within coordinates of
Tssr89274 291 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262187931
MGI SNP Detail		 Chr9:45817865 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rnf214 within coordinates of
Rr677995 within coordinates of
Tssr89274 270 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MRL/MpJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222119433
MGI SNP Detail		 Chr9:45818066 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rnf214 within coordinates of
Rr677995 within coordinates of
Tssr89274 69 bp downstream
 SNP A/G A A G G G G G G G G G G G G G G G G G G G A G G G G A A G A G A G G G G G G A G G G G G G G G G G G
rs236352115
MGI SNP Detail		 Chr9:45818102 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rnf214 within coordinates of
Rr677995 within coordinates of
Tssr89274 33 bp downstream
 SNP C/T T T C C C C C C C C C C C C C C C C C C C T C C C C T T C T C T C C C C C C T C C C C C C C C C C C
rs253651540
MGI SNP Detail		 Chr9:45818104 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rnf214 within coordinates of
Rr677995 within coordinates of
Tssr89274 31 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229008152
MGI SNP Detail		 Chr9:45818126 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rnf214 within coordinates of
Rr677995 within coordinates of
Tssr89274 9 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs16793480
MGI SNP Detail		 Chr9:45818148 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rnf214 within coordinates of
Rr677995 within coordinates of
Tssr89274 within coordinates of
 SNP A/G A A A A A A G A A A A A A A
rs263463125
MGI SNP Detail		 Chr9:45818327 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 135 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231932938
MGI SNP Detail		 Chr9:45818351 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 159 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs251398173
MGI SNP Detail		 Chr9:45818359 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 167 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs214174619
MGI SNP Detail		 Chr9:45818362 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 170 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228773687
MGI SNP Detail		 Chr9:45818527 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 335 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33695447
MGI SNP Detail		 Chr9:45818572 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 380 bp upstream
 SNP A/G G A A
rs30227158
MGI SNP Detail		 Chr9:45818576 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 384 bp upstream
 SNP C/T T C C
rs13480170
MGI SNP Detail		 Chr9:45818614 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 422 bp upstream
 SNP A/G A A G G G G G G G G G G G G A G G A G G A G G A A G A A G A A G G G G G G A G G A G G A G G G
rs16793481
MGI SNP Detail		 Chr9:45818666 Cpgi21697 within coordinates of
Pcsk7 within coordinates of
Rr677998 within coordinates of
Tssr89274 474 bp upstream
 SNP A/G G G G G G G G G G G G G G G G A
rs215943286
MGI SNP Detail		 Chr9:45818751 Pcsk7 within coordinates of
Tssr89274 559 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs29792067
MGI SNP Detail		 Chr9:45818759 Pcsk7 within coordinates of
Tssr89274 567 bp upstream
 SNP C/T C T T
rs8240155
MGI SNP Detail		 Chr9:45818794 Pcsk7 within coordinates of
Tssr89274 602 bp upstream
 SNP A/C C C C A
rs8240156
MGI SNP Detail		 Chr9:45818820 Pcsk7 within coordinates of
Tssr89274 628 bp upstream
 SNP G/T T T T G
rs221540536
MGI SNP Detail		 Chr9:45819108 Pcsk7 within coordinates of
Rr677999 within coordinates of
Tssr89274 916 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236285117
MGI SNP Detail		 Chr9:45819209 Pcsk7 within coordinates of
Rr677999 within coordinates of
Tssr89274 1017 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253540065
MGI SNP Detail		 Chr9:45819641 Pcsk7 within coordinates of
Tssr89274 1449 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222346943
MGI SNP Detail		 Chr9:45819725 Pcsk7 within coordinates of
Tssr89274 1533 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240523368
MGI SNP Detail		 Chr9:45819845 Pcsk7 within coordinates of
Tssr89274 1653 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265643740
MGI SNP Detail		 Chr9:45820070 Pcsk7 within coordinates of
Tssr89274 1878 bp upstream
 SNP A/T A A A T T T T T T T T T T T T T T T T A T T A T T T T A A T T A T A T T T T T T A T T T T T T T A T T T T
rs231490814
MGI SNP Detail		 Chr9:45820105 Pcsk7 within coordinates of
Tssr89274 1913 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 50 of 50
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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