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Mouse SNP Summary
Symbol
Name
ID 		Tssr89588
transcription start site region 89588
MGI:6017355

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Showing SNP(s) 1 - 35 of 35

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs387764242
MGI SNP Detail		 Chr9:52586342 AI593442 within coordinates of
Tssr89588 1753 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T T T T T T T T T T T T C T T
rs234169778
MGI SNP Detail		 Chr9:52586611 AI593442 within coordinates of
Tssr89588 1484 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259473937
MGI SNP Detail		 Chr9:52586739 AI593442 within coordinates of
Tssr89588 1356 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263835098
MGI SNP Detail		 Chr9:52586822 AI593442 within coordinates of
Tssr89588 1273 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs227708391
MGI SNP Detail		 Chr9:52586892 AI593442 within coordinates of
Tssr89588 1203 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245810312
MGI SNP Detail		 Chr9:52587164 AI593442 within coordinates of
Tssr89588 931 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs213687597
MGI SNP Detail		 Chr9:52587182 AI593442 within coordinates of
Tssr89588 913 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225148090
MGI SNP Detail		 Chr9:52587319 AI593442 within coordinates of
Tssr89588 776 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249315068
MGI SNP Detail		 Chr9:52587329 AI593442 within coordinates of
Tssr89588 766 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G A G A A G G G G A G G G G G G A G G G G G G G A G A G G
rs219297117
MGI SNP Detail		 Chr9:52587345 AI593442 within coordinates of
Tssr89588 750 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239391405
MGI SNP Detail		 Chr9:52587409 AI593442 within coordinates of
Tssr89588 686 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs263258168
MGI SNP Detail		 Chr9:52587726 AI593442 within coordinates of
Tssr89588 369 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215175934
MGI SNP Detail		 Chr9:52587756 AI593442 within coordinates of
Tssr89588 339 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232069460
MGI SNP Detail		 Chr9:52587885 AI593442 within coordinates of
Tssr89588 210 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs249377569
MGI SNP Detail		 Chr9:52587925 AI593442 within coordinates of
Tssr89588 170 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218419593
MGI SNP Detail		 Chr9:52588007 AI593442 within coordinates of
Tssr89588 88 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235586507
MGI SNP Detail		 Chr9:52588048 AI593442 within coordinates of
Tssr89588 47 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260740128
MGI SNP Detail		 Chr9:52588068 AI593442 within coordinates of
Tssr89588 27 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225906825
MGI SNP Detail		 Chr9:52588087 AI593442 within coordinates of
Tssr89588 8 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583609745
MGI SNP Detail		 Chr9:52588141 AI593442 within coordinates of
Tssr89588 33 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265776992
MGI SNP Detail		 Chr9:52588266 AI593442 within coordinates of
Tssr89588 158 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs227745102
MGI SNP Detail		 Chr9:52588328 AI593442 within coordinates of
Tssr89588 220 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240051439
MGI SNP Detail		 Chr9:52588952 AI593442 within coordinates of
Tssr89588 844 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257919571
MGI SNP Detail		 Chr9:52589129 AI593442 within coordinates of
Tssr89588 1021 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs225086311
MGI SNP Detail		 Chr9:52589252 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1144 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252690237
MGI SNP Detail		 Chr9:52589399 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1291 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219499619
MGI SNP Detail		 Chr9:52589561 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1453 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234241996
MGI SNP Detail		 Chr9:52589733 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1625 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253047647
MGI SNP Detail		 Chr9:52589734 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1626 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs215024015
MGI SNP Detail		 Chr9:52589771 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1663 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232018437
MGI SNP Detail		 Chr9:52589879 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1771 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249706734
MGI SNP Detail		 Chr9:52589941 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1833 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212847546
MGI SNP Detail		 Chr9:52589980 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1872 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234350430
MGI SNP Detail		 Chr9:52589982 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1874 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264018856
MGI SNP Detail		 Chr9:52590001 AI593442 within coordinates of
Cpgi21748 within coordinates of
Tssr89588 1893 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 35 of 35
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory