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Mouse SNP Summary
Symbol
Name
ID 		Tssr89614
transcription start site region 89614
MGI:6017381

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218849381
MGI SNP Detail		 Chr9:53615526 Rab39 within coordinates of
Tssr89614 1985 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243788948
MGI SNP Detail		 Chr9:53615581 Rab39 within coordinates of
Tssr89614 1930 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs264374914
MGI SNP Detail		 Chr9:53615585 Rab39 within coordinates of
Tssr89614 1926 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225874793
MGI SNP Detail		 Chr9:53615615 Rab39 within coordinates of
Tssr89614 1896 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A
rs246138768
MGI SNP Detail		 Chr9:53615647 Rab39 within coordinates of
Tssr89614 1864 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256836485
MGI SNP Detail		 Chr9:53615651 Rab39 within coordinates of
Tssr89614 1860 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244884486
MGI SNP Detail		 Chr9:53615683 Rab39 within coordinates of
Tssr89614 1828 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs213876516
MGI SNP Detail		 Chr9:53615707 Rab39 within coordinates of
Tssr89614 1804 bp downstream
 SNP C/T C T
rs49030022
MGI SNP Detail		 Chr9:53615724 Rab39 within coordinates of
Tssr89614 1787 bp downstream
 SNP C/T C C T
rs229307319
MGI SNP Detail		 Chr9:53615748 Rab39 within coordinates of
Tssr89614 1763 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253121991
MGI SNP Detail		 Chr9:53615752 Rab39 within coordinates of
Tssr89614 1759 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs46999826
MGI SNP Detail		 Chr9:53615780 Rab39 within coordinates of
Tssr89614 1731 bp downstream
 SNP C/G C C C G
rs242295642
MGI SNP Detail		 Chr9:53615979 Rab39 within coordinates of
Tssr89614 1532 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46289894
MGI SNP Detail		 Chr9:53616034 Rab39 within coordinates of
Tssr89614 1477 bp downstream
 SNP A/T T T T A
rs215245280
MGI SNP Detail		 Chr9:53616059 Rab39 within coordinates of
Tssr89614 1452 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs49063123
MGI SNP Detail		 Chr9:53616170 Rab39 within coordinates of
Tssr89614 1341 bp downstream
 SNP C/T C C C T
rs51596703
MGI SNP Detail		 Chr9:53616190 Rab39 within coordinates of
Tssr89614 1321 bp downstream
 SNP C/T T T T C
rs48298459
MGI SNP Detail		 Chr9:53616288 Rab39 within coordinates of
Tssr89614 1223 bp downstream
 SNP G/T G G T
rs234663970
MGI SNP Detail		 Chr9:53616335 Rab39 within coordinates of
Tssr89614 1176 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs264138203
MGI SNP Detail		 Chr9:53616354 Rab39 within coordinates of
Tssr89614 1157 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs225660155
MGI SNP Detail		 Chr9:53616423 Rab39 within coordinates of
Tssr89614 1088 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs239792671
MGI SNP Detail		 Chr9:53616524 Rab39 within coordinates of
Tssr89614 987 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs257020743
MGI SNP Detail		 Chr9:53616525 Rab39 within coordinates of
Tssr89614 986 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs219880511
MGI SNP Detail		 Chr9:53616564 Rab39 within coordinates of
Tssr89614 947 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237131748
MGI SNP Detail		 Chr9:53616609 Rab39 within coordinates of
Tssr89614 902 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254352318
MGI SNP Detail		 Chr9:53616737 Rab39 within coordinates of
Tssr89614 774 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229648934
MGI SNP Detail		 Chr9:53616738 Rab39 within coordinates of
Tssr89614 773 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs249504531
MGI SNP Detail		 Chr9:53616822 Rab39 within coordinates of
Tssr89614 689 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs266209955
MGI SNP Detail		 Chr9:53616909 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 602 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs233418137
MGI SNP Detail		 Chr9:53616928 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 583 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs247519841
MGI SNP Detail		 Chr9:53616929 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 582 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs215304053
MGI SNP Detail		 Chr9:53617019 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 492 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs226746276
MGI SNP Detail		 Chr9:53617164 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 347 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245033791
MGI SNP Detail		 Chr9:53617417 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 94 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs212937479
MGI SNP Detail		 Chr9:53617453 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 58 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236168630
MGI SNP Detail		 Chr9:53617454 Cpgi21758 within coordinates of
Rab39 within coordinates of
Tssr89614 57 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260902004
MGI SNP Detail		 Chr9:53617552 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 1 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217952427
MGI SNP Detail		 Chr9:53617590 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 39 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233430957
MGI SNP Detail		 Chr9:53617620 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 69 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251121591
MGI SNP Detail		 Chr9:53617660 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 109 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219840771
MGI SNP Detail		 Chr9:53617696 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 145 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237302607
MGI SNP Detail		 Chr9:53617702 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 151 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs261262552
MGI SNP Detail		 Chr9:53617738 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 187 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219988424
MGI SNP Detail		 Chr9:53617767 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 216 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244475032
MGI SNP Detail		 Chr9:53617812 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 261 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264583258
MGI SNP Detail		 Chr9:53617818 Cpgi21758 within coordinates of
Rr401371 within coordinates of
Tssr89614 267 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234492469
MGI SNP Detail		 Chr9:53617854 Cpgi21758 within coordinates of
Tssr89614 303 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs226707015
MGI SNP Detail		 Chr9:53618058 Tssr89614 507 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245199278
MGI SNP Detail		 Chr9:53618107 Tssr89614 556 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213345217
MGI SNP Detail		 Chr9:53618278 Tssr89614 727 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227799508
MGI SNP Detail		 Chr9:53618281 Tssr89614 730 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260294530
MGI SNP Detail		 Chr9:53618425 Tssr89614 874 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs217919272
MGI SNP Detail		 Chr9:53618435 Tssr89614 884 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs233566232
MGI SNP Detail		 Chr9:53618449 Tssr89614 898 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251089057
MGI SNP Detail		 Chr9:53618469 Tssr89614 918 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214306134
MGI SNP Detail		 Chr9:53618498 Tssr89614 947 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs231202800
MGI SNP Detail		 Chr9:53618641 Tssr89614 1090 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256087030
MGI SNP Detail		 Chr9:53618720 Tssr89614 1169 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219692882
MGI SNP Detail		 Chr9:53618745 Tssr89614 1194 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582046662
MGI SNP Detail		 Chr9:53618827 Tssr89614 1276 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585439015
MGI SNP Detail		 Chr9:53618860 Tssr89614 1309 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580056424
MGI SNP Detail		 Chr9:53618883 Tssr89614 1332 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs582655407
MGI SNP Detail		 Chr9:53618885 Tssr89614 1334 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs248012833
MGI SNP Detail		 Chr9:53618980 Tssr89614 1429 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263634542
MGI SNP Detail		 Chr9:53618998 Tssr89614 1447 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs223039607
MGI SNP Detail		 Chr9:53619109 Tssr89614 1558 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241634704
MGI SNP Detail		 Chr9:53619152 Tssr89614 1601 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs259376707
MGI SNP Detail		 Chr9:53619174 Tssr89614 1623 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220581539
MGI SNP Detail		 Chr9:53619186 Tssr89614 1635 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246163989
MGI SNP Detail		 Chr9:53619204 Tssr89614 1653 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262008033
MGI SNP Detail		 Chr9:53619266 Tssr89614 1715 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228476159
MGI SNP Detail		 Chr9:53619414 Tssr89614 1863 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254747283
MGI SNP Detail		 Chr9:53619436 Tssr89614 1885 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265949951
MGI SNP Detail		 Chr9:53619502 Tssr89614 1951 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 74 of 74
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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