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Mouse SNP Summary
Symbol
Name
ID 		Tssr89819
transcription start site region 89819
MGI:6017586

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Showing SNP(s) 1 - 66 of 66

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226359657
MGI SNP Detail		 Chr9:57661613 Clk3 within coordinates of
Tssr89819 1958 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs36891656
MGI SNP Detail		 Chr9:57661669 Clk3 within coordinates of
Tssr89819 1902 bp downstream
 SNP C/T T T T T T T C T T T T T T T T
rs257068408
MGI SNP Detail		 Chr9:57661686 Clk3 within coordinates of
Tssr89819 1885 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs234393238
MGI SNP Detail		 Chr9:57661698 Clk3 within coordinates of
Tssr89819 1873 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs255125999
MGI SNP Detail		 Chr9:57662031 Clk3 within coordinates of
Tssr89819 1540 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs6358867
MGI SNP Detail		 Chr9:57662131 Clk3 within coordinates of
Tssr89819 1440 bp downstream
 SNP A/G G A
rs6359278
MGI SNP Detail		 Chr9:57662193 Clk3 within coordinates of
Tssr89819 1378 bp downstream
 SNP G/T G T
rs6359280
MGI SNP Detail		 Chr9:57662195 Clk3 within coordinates of
Tssr89819 1376 bp downstream
 SNP A/G G G G G G G A A G G G A G G G G
rs6359304
MGI SNP Detail		 Chr9:57662211 Clk3 within coordinates of
Tssr89819 1360 bp downstream
 SNP C/T T T T T T T T C C T T T C T T T T
rs243911773
MGI SNP Detail		 Chr9:57662221 Clk3 within coordinates of
Tssr89819 1350 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs37278971
MGI SNP Detail		 Chr9:57662282 Clk3 within coordinates of
Tssr89819 1289 bp downstream
 SNP A/G G G G G G G G G A G G G G
rs6373338
MGI SNP Detail		 Chr9:57662453 Clk3 within coordinates of
Tssr89819 1118 bp downstream
 SNP C/T C C C C C C C T T C C C C C C C C
rs230170629
MGI SNP Detail		 Chr9:57662475 Clk3 within coordinates of
Tssr89819 1096 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs6373911
MGI SNP Detail		 Chr9:57662597 Clk3 within coordinates of
Tssr89819 974 bp downstream
 SNP C/T T T T T T T T C C T T T C T T T T
rs212737299
MGI SNP Detail		 Chr9:57662691 Clk3 within coordinates of
Tssr89819 880 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36443942
MGI SNP Detail		 Chr9:57662784 Clk3 within coordinates of
Tssr89819 787 bp downstream
 SNP A/G A A A A A G A A A G A A A A
rs260900430
MGI SNP Detail		 Chr9:57662849 Clk3 within coordinates of
Tssr89819 722 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A C C A A A A A A C A A A A A A A C A A A A
rs224168119
MGI SNP Detail		 Chr9:57662850 Clk3 within coordinates of
Tssr89819 721 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs37434915
MGI SNP Detail		 Chr9:57662860 Clk3 within coordinates of
Tssr89819 711 bp downstream
 SNP A/G A A A G A G A A A A
rs250941935
MGI SNP Detail		 Chr9:57662900 Clk3 within coordinates of
Tssr89819 671 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219953967
MGI SNP Detail		 Chr9:57662919 Clk3 within coordinates of
Tssr89819 652 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G T G G T T G G G G G G T G G G G G G G T G G G T
rs237006918
MGI SNP Detail		 Chr9:57662930 Clk3 within coordinates of
Tssr89819 641 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264801165
MGI SNP Detail		 Chr9:57662956 Clk3 within coordinates of
Tssr89819 615 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233416034
MGI SNP Detail		 Chr9:57663060 Clk3 within coordinates of
Tssr89819 511 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A C A A C C A A A A A A C A A A A A A A C A A A C
rs251746797
MGI SNP Detail		 Chr9:57663096 Clk3 within coordinates of
Tssr89819 475 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs37064967
MGI SNP Detail		 Chr9:57663229 Clk3 within coordinates of
Tssr89819 342 bp downstream
 SNP C/T T T T T C T T T C T T
rs36487977
MGI SNP Detail		 Chr9:57663279 Clk3 within coordinates of
Tssr89819 292 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs244153638
MGI SNP Detail		 Chr9:57663340 Clk3 within coordinates of
Tssr89819 231 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214502084
MGI SNP Detail		 Chr9:57663343 Clk3 within coordinates of
Tssr89819 228 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs37197197
MGI SNP Detail		 Chr9:57663346 Clk3 within coordinates of
Tssr89819 225 bp downstream
 SNP A/G G G G G G A G G G G G G G G
rs36824285
MGI SNP Detail		 Chr9:57663403 Clk3 within coordinates of
Tssr89819 168 bp downstream
 SNP C/T T T T T T T C T T T C T T T T
rs218317242
MGI SNP Detail		 Chr9:57663405 Clk3 within coordinates of
Tssr89819 166 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240444484
MGI SNP Detail		 Chr9:57663498 Clk3 within coordinates of
Tssr89819 73 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578379265
MGI SNP Detail		 Chr9:57663575 Clk3 within coordinates of
Tssr89819 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs581074996
MGI SNP Detail		 Chr9:57663596 Clk3 within coordinates of
Tssr89819 21 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584542180
MGI SNP Detail		 Chr9:57663599 Clk3 within coordinates of
Tssr89819 24 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs264150908
MGI SNP Detail		 Chr9:57663663 Clk3 within coordinates of
Tssr89819 88 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215485108
MGI SNP Detail		 Chr9:57663690 Clk3 within coordinates of
Tssr89819 115 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G G A G G G G G G G G G G G G
rs234781675
MGI SNP Detail		 Chr9:57663724 Clk3 within coordinates of
Tssr89819 149 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251182974
MGI SNP Detail		 Chr9:57663768 Clk3 within coordinates of
Tssr89819 193 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T C C T T T T T T C T T T T T T T C T T T T
rs578574763
MGI SNP Detail		 Chr9:57663785 Clk3 within coordinates of
Tssr89819 210 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs582606230
MGI SNP Detail		 Chr9:57663815 Clk3 within coordinates of
Tssr89819 240 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220011809
MGI SNP Detail		 Chr9:57664073 Clk3 within coordinates of
Tssr89819 498 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229668597
MGI SNP Detail		 Chr9:57664104 Clk3 within coordinates of
Tssr89819 529 bp upstream
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C T T T C C C C C C C C C
rs255906660
MGI SNP Detail		 Chr9:57664115 Clk3 within coordinates of
Tssr89819 540 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225940877
MGI SNP Detail		 Chr9:57664116 Clk3 within coordinates of
Tssr89819 541 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T C T T T T T T C T T T T T T T C T T T T
rs248103485
MGI SNP Detail		 Chr9:57664152 Clk3 within coordinates of
Tssr89819 577 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C C T C C C C C C C T C C C C
rs265582723
MGI SNP Detail		 Chr9:57664158 Clk3 within coordinates of
Tssr89819 583 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A A G G G G G G A G G G G G G G A G G G A
rs221606769
MGI SNP Detail		 Chr9:57664160 Clk3 within coordinates of
Tssr89819 585 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237990440
MGI SNP Detail		 Chr9:57664168 Clk3 within coordinates of
Tssr89819 593 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256733205
MGI SNP Detail		 Chr9:57664172 Clk3 within coordinates of
Tssr89819 597 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C A A C C C C C C A C C C C C C C A C C C C
rs223602227
MGI SNP Detail		 Chr9:57664408 Clk3 within coordinates of
Tssr89819 833 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243149533
MGI SNP Detail		 Chr9:57664508 Clk3 within coordinates of
Tssr89819 933 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264036974
MGI SNP Detail		 Chr9:57664533 Clk3 within coordinates of
Tssr89819 958 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs235168930
MGI SNP Detail		 Chr9:57664556 Clk3 within coordinates of
Tssr89819 981 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252431851
MGI SNP Detail		 Chr9:57664619 Clk3 within coordinates of
Tssr89819 1044 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs216063303
MGI SNP Detail		 Chr9:57664672 Clk3 within coordinates of
Tssr89819 1097 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36456211
MGI SNP Detail		 Chr9:57664882 Clk3 within coordinates of
Tssr89819 1307 bp upstream
 SNP G/T G G G G G G T G G G G G G G G
rs245020240
MGI SNP Detail		 Chr9:57664891 Clk3 within coordinates of
Tssr89819 1316 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214376578
MGI SNP Detail		 Chr9:57664967 Clk3 within coordinates of
Tssr89819 1392 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs37293822
MGI SNP Detail		 Chr9:57664993 Clk3 within coordinates of
Tssr89819 1418 bp upstream
 SNP A/G A A A A A A G A A A A A A A A
rs261295734
MGI SNP Detail		 Chr9:57665203 Clk3 within coordinates of
Tssr89819 1628 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs225404743
MGI SNP Detail		 Chr9:57665258 Clk3 within coordinates of
Tssr89819 1683 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242822270
MGI SNP Detail		 Chr9:57665412 Clk3 within coordinates of
Tssr89819 1837 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258407435
MGI SNP Detail		 Chr9:57665470 Clk3 within coordinates of
Tssr89819 1895 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs221644715
MGI SNP Detail		 Chr9:57665508 Clk3 within coordinates of
Tssr89819 1933 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
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Showing SNP(s) 1 - 66 of 66
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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