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Mouse SNP Summary
Symbol
Name
ID 		Tssr90789
transcription start site region 90789
MGI:6018556

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234799629
MGI SNP Detail		 Chr9:86575939 Me1 within coordinates of
Tssr90789 1952 bp downstream
 SNP C/T T T T T C T T T T T T T T T T T C C C T T T T C C C C T C T T C C C T T C C C T C C C T T C T T T C C T
rs252172000
MGI SNP Detail		 Chr9:86575949 Me1 within coordinates of
Tssr90789 1942 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G T G G G G G G G
rs216095194
MGI SNP Detail		 Chr9:86575988 Me1 within coordinates of
Tssr90789 1903 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239331477
MGI SNP Detail		 Chr9:86576020 Me1 within coordinates of
Tssr90789 1871 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs257226528
MGI SNP Detail		 Chr9:86576027 Me1 within coordinates of
Tssr90789 1864 bp downstream
 SNP A/C C C C C A C C C C C C C C C C C A A A C C C C A A A A C A A C C A A A C C A A A C A A A C C A C C C A A C
rs221293030
MGI SNP Detail		 Chr9:86576064 Me1 within coordinates of
Tssr90789 1827 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241229071
MGI SNP Detail		 Chr9:86576067 Me1 within coordinates of
Tssr90789 1824 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255383515
MGI SNP Detail		 Chr9:86576078 Me1 within coordinates of
Tssr90789 1813 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222640074
MGI SNP Detail		 Chr9:86576090 Me1 within coordinates of
Tssr90789 1801 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241261066
MGI SNP Detail		 Chr9:86576105 Me1 within coordinates of
Tssr90789 1786 bp downstream
 SNP C/T C C C C T C C C C C C C C C C C T T T C C C C T T T T C T T C C T T T C C T T T C T T T C C T C C C T T C
rs258954815
MGI SNP Detail		 Chr9:86576241 Me1 within coordinates of
Tssr90789 1650 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs51768554
MGI SNP Detail		 Chr9:86576324 Me1 within coordinates of
Tssr90789 1567 bp downstream
 SNP A/G A G
rs580134177
MGI SNP Detail		 Chr9:86576438 Me1 within coordinates of
Tssr90789 1453 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A G A A A A A A A
rs245828310
MGI SNP Detail		 Chr9:86576660 Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 1231 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs261808857
MGI SNP Detail		 Chr9:86576662 Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 1229 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250431468
MGI SNP Detail		 Chr9:86576709 Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 1182 bp downstream
 SNP C/T C T
rs52136373
MGI SNP Detail		 Chr9:86576863 Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 1028 bp downstream
 SNP A/G G A
rs387129946
MGI SNP Detail		 Chr9:86576911 Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 980 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs246286684
MGI SNP Detail		 Chr9:86577065 Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 826 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs585760896
MGI SNP Detail		 Chr9:86577201 Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 690 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216672149
MGI SNP Detail		 Chr9:86577301 Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 590 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237223138
MGI SNP Detail		 Chr9:86577365 Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 526 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49812484
MGI SNP Detail		 Chr9:86577453 Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 438 bp downstream
 SNP C/T C T C T
rs50755483
MGI SNP Detail		 Chr9:86577485 Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 406 bp downstream
 SNP G G G G
rs230079301
MGI SNP Detail		 Chr9:86577503 Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 388 bp downstream
 SNP A/G A A A A G A A A A A A A A A A A G G G A A A A G G G G A G G A A G G G A A G G G A G G G A A G A A A G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs48012567
MGI SNP Detail		 Chr9:86577519 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 372 bp downstream
 SNP C/T T T C
rs50437979
MGI SNP Detail		 Chr9:86577586 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 305 bp downstream
 SNP A/C C A C
rs234867224
MGI SNP Detail		 Chr9:86577587 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 304 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252769438
MGI SNP Detail		 Chr9:86577765 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 126 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs223133069
MGI SNP Detail		 Chr9:86577785 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Me1 within coordinates of
Rr206830 within coordinates of
Tssr90789 106 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs30090886
MGI SNP Detail		 Chr9:86578019 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 112 bp upstream
 SNP G/T G T G
rs230834276
MGI SNP Detail		 Chr9:86578033 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 126 bp upstream
 SNP G/T T G
rs220079613
MGI SNP Detail		 Chr9:86578093 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 186 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G C G G G G G G G C G G G G
rs241374848
MGI SNP Detail		 Chr9:86578123 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 216 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258740091
MGI SNP Detail		 Chr9:86578138 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 231 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227245094
MGI SNP Detail		 Chr9:86578229 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 322 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244982662
MGI SNP Detail		 Chr9:86578295 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 388 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263342150
MGI SNP Detail		 Chr9:86578298 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 391 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231663835
MGI SNP Detail		 Chr9:86578404 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 497 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250978589
MGI SNP Detail		 Chr9:86578410 A330041J22Rik within coordinates of
Cpgi22104 within coordinates of
Rr206830 within coordinates of
Tssr90789 503 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs213621447
MGI SNP Detail		 Chr9:86578469 A330041J22Rik within coordinates of
Rr206830 within coordinates of
Tssr90789 562 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs230022619
MGI SNP Detail		 Chr9:86578476 A330041J22Rik within coordinates of
Rr206830 within coordinates of
Tssr90789 569 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs248944520
MGI SNP Detail		 Chr9:86578514 A330041J22Rik within coordinates of
Rr206830 within coordinates of
Tssr90789 607 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs29591133
MGI SNP Detail		 Chr9:86578528 A330041J22Rik within coordinates of
Rr206830 within coordinates of
Tssr90789 621 bp upstream
 SNP A/G G A G G A
rs234813451
MGI SNP Detail		 Chr9:86578570 A330041J22Rik within coordinates of
Rr206830 within coordinates of
Tssr90789 663 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29783220
MGI SNP Detail		 Chr9:86578728 A330041J22Rik within coordinates of
Tssr90789 821 bp upstream
 SNP A/T T A A T
rs223375424
MGI SNP Detail		 Chr9:86578747 A330041J22Rik within coordinates of
Tssr90789 840 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238077326
MGI SNP Detail		 Chr9:86578751 A330041J22Rik within coordinates of
Tssr90789 844 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs256130939
MGI SNP Detail		 Chr9:86578794 A330041J22Rik within coordinates of
Tssr90789 887 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs217825810
MGI SNP Detail		 Chr9:86579080 A330041J22Rik within coordinates of
Rr205233 within coordinates of
Tssr90789 1173 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241466485
MGI SNP Detail		 Chr9:86579178 A330041J22Rik within coordinates of
Rr205233 within coordinates of
Tssr90789 1271 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258670099
MGI SNP Detail		 Chr9:86579223 A330041J22Rik within coordinates of
Tssr90789 1316 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs221276909
MGI SNP Detail		 Chr9:86579289 A330041J22Rik within coordinates of
Tssr90789 1382 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs238855692
MGI SNP Detail		 Chr9:86579423 A330041J22Rik within coordinates of
Tssr90789 1516 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs265210343
MGI SNP Detail		 Chr9:86579430 A330041J22Rik within coordinates of
Tssr90789 1523 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231241350
MGI SNP Detail		 Chr9:86579474 A330041J22Rik within coordinates of
Tssr90789 1567 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255774471
MGI SNP Detail		 Chr9:86579487 A330041J22Rik within coordinates of
Tssr90789 1580 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262158424
MGI SNP Detail		 Chr9:86579550 A330041J22Rik within coordinates of
Tssr90789 1643 bp upstream
 SNP C/T C C C C T C C C C C C C C C C C T T T C C C C T T T T C T T C C T T T C C T T T C T T T C C T C C C T T C
rs30131032
MGI SNP Detail		 Chr9:86579566 A330041J22Rik within coordinates of
Tssr90789 1659 bp upstream
 SNP G/T G G G T G G
rs249059614
MGI SNP Detail		 Chr9:86579615 A330041J22Rik within coordinates of
Tssr90789 1708 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216832388
MGI SNP Detail		 Chr9:86579627 A330041J22Rik within coordinates of
Tssr90789 1720 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252321907
MGI SNP Detail		 Chr9:86579663 A330041J22Rik within coordinates of
Tssr90789 1756 bp upstream
 SNP A/C C A C C C C A A A A A A C A C C A C A A C
rs52461267
MGI SNP Detail		 Chr9:86579668 A330041J22Rik within coordinates of
Tssr90789 1761 bp upstream
 SNP C C C
rs582933587
MGI SNP Detail		 Chr9:86579697 A330041J22Rik within coordinates of
Tssr90789 1790 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G
rs30225773
MGI SNP Detail		 Chr9:86579707 A330041J22Rik within coordinates of
Tssr90789 1800 bp upstream
 SNP A/G G G A
rs261505643
MGI SNP Detail		 Chr9:86579749 A330041J22Rik within coordinates of
Tssr90789 1842 bp upstream
 SNP C/T C C C C T C C C C C C C C C C C T T T C C C C C C C T C C C C C C C T C C C C C C T T C C C C C C C C C C
rs48468116
MGI SNP Detail		 Chr9:86579800 A330041J22Rik within coordinates of
Tssr90789 1893 bp upstream
 SNP C C C C
rs49820415
MGI SNP Detail		 Chr9:86579808 A330041J22Rik within coordinates of
Tssr90789 1901 bp upstream
 SNP A A A
rs51406558
MGI SNP Detail		 Chr9:86579812 A330041J22Rik within coordinates of
Tssr90789 1905 bp upstream
 SNP C C C
rs52495758
MGI SNP Detail		 Chr9:86579827 A330041J22Rik within coordinates of
Tssr90789 1920 bp upstream
 SNP C C C
rs247563823
MGI SNP Detail		 Chr9:86579831 A330041J22Rik within coordinates of
Tssr90789 1924 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49502209
MGI SNP Detail		 Chr9:86579839 A330041J22Rik within coordinates of
Tssr90789 1932 bp upstream
 SNP T T T
rs48276605
MGI SNP Detail		 Chr9:86579852 A330041J22Rik within coordinates of
Tssr90789 1945 bp upstream
 SNP G G G
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Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory