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Mouse SNP Summary
Symbol
Name
ID
Tssr92405
transcription start site region 92405
MGI:6020172

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224038680
MGI SNP Detail
Chr10:13838597 Tssr92405 1996 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs250996006
MGI SNP Detail
Chr10:13838727 Tssr92405 1866 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582332743
MGI SNP Detail
Chr10:13838741 Tssr92405 1852 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263906306
MGI SNP Detail
Chr10:13838786 Tssr92405 1807 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs224008175
MGI SNP Detail
Chr10:13838820 Tssr92405 1773 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241992513
MGI SNP Detail
Chr10:13838840 Tssr92405 1753 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29374676
MGI SNP Detail
Chr10:13838856 Tssr92405 1737 bp upstream
SNP A/T A A T A A A
rs226460947
MGI SNP Detail
Chr10:13838882 Tssr92405 1711 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251034815
MGI SNP Detail
Chr10:13838897 Tssr92405 1696 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs585390125
MGI SNP Detail
Chr10:13838941 Tssr92405 1652 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs51273607
MGI SNP Detail
Chr10:13839021 Tssr92405 1572 bp upstream
SNP C/G G G C
rs238153642
MGI SNP Detail
Chr10:13839042 Tssr92405 1551 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260402127
MGI SNP Detail
Chr10:13839070 Tssr92405 1523 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216825689
MGI SNP Detail
Chr10:13839104 Tssr92405 1489 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230816950
MGI SNP Detail
Chr10:13839120 Tssr92405 1473 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs50465861
MGI SNP Detail
Chr10:13839126 Tssr92405 1467 bp upstream
SNP C/T T T C
rs220306143
MGI SNP Detail
Chr10:13839243 Tssr92405 1350 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs579116862
MGI SNP Detail
Chr10:13839244 Tssr92405 1349 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs582505631
MGI SNP Detail
Chr10:13839245 Tssr92405 1348 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs47414653
MGI SNP Detail
Chr10:13839253 Tssr92405 1340 bp upstream
SNP C/G G G C
rs259429243
MGI SNP Detail
Chr10:13839297 Tssr92405 1296 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224104910
MGI SNP Detail
Chr10:13839303 Tssr92405 1290 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586004949
MGI SNP Detail
Chr10:13839346 Tssr92405 1247 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs580575501
MGI SNP Detail
Chr10:13839348 Tssr92405 1245 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs583918843
MGI SNP Detail
Chr10:13839354 Tssr92405 1239 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248192816
MGI SNP Detail
Chr10:13839456 Tssr92405 1137 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258768802
MGI SNP Detail
Chr10:13839458 Tssr92405 1135 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs218478167
MGI SNP Detail
Chr10:13839492 Tssr92405 1101 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs235660858
MGI SNP Detail
Chr10:13839601 Tssr92405 992 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255932164
MGI SNP Detail
Chr10:13839648 Tssr92405 945 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229430407
MGI SNP Detail
Chr10:13839768 Tssr92405 825 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs51194358
MGI SNP Detail
Chr10:13839789 Tssr92405 804 bp upstream
SNP C/T C C T
rs227204720
MGI SNP Detail
Chr10:13839907 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 686 bp upstream
SNP A/C C A
rs585457970
MGI SNP Detail
Chr10:13839933 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 660 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263809946
MGI SNP Detail
Chr10:13839945 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 648 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232489918
MGI SNP Detail
Chr10:13839953 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 640 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29315034
MGI SNP Detail
Chr10:13840000 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 593 bp upstream
SNP C/T C C T C C
rs216899298
MGI SNP Detail
Chr10:13840038 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 555 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579532726
MGI SNP Detail
Chr10:13840050 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 543 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs29375908
MGI SNP Detail
Chr10:13840118 Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 475 bp upstream
SNP C/T T T C T T
rs3697835
MGI SNP Detail
Chr10:13840298 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Rr384171 within coordinates of
Rr427854 within coordinates of
Tssr92405 295 bp upstream
SNP C/T T T T C T T
rs214510006
MGI SNP Detail
Chr10:13840438 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr384171 within coordinates of
Rr427855 within coordinates of
Tssr92405 155 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T
rs236278431
MGI SNP Detail
Chr10:13840440 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr384171 within coordinates of
Rr427855 within coordinates of
Tssr92405 153 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C A A C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs3698519
MGI SNP Detail
Chr10:13840444 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr384171 within coordinates of
Rr427855 within coordinates of
Tssr92405 149 bp upstream
SNP C/T T T C C
rs215686489
MGI SNP Detail
Chr10:13840501 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr384171 within coordinates of
Rr427855 within coordinates of
Tssr92405 92 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C C C T T C T T T T C T T T T T T C T T T T T T C T T T T
rs3699030
MGI SNP Detail
Chr10:13840504 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr384171 within coordinates of
Rr427855 within coordinates of
Tssr92405 89 bp upstream
SNP A/T T T T A T T
rs252561888
MGI SNP Detail
Chr10:13841130 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr384171 within coordinates of
Rr427855 within coordinates of
Tssr92405 511 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs218505887
MGI SNP Detail
Chr10:13841173 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr384171 within coordinates of
Rr427855 within coordinates of
Tssr92405 554 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs235725878
MGI SNP Detail
Chr10:13841202 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 583 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G G G A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs250261270
MGI SNP Detail
Chr10:13841255 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 636 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221742011
MGI SNP Detail
Chr10:13841277 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 658 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs245934805
MGI SNP Detail
Chr10:13841320 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 701 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265407648
MGI SNP Detail
Chr10:13841324 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 705 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A G G A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232012940
MGI SNP Detail
Chr10:13841331 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 712 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243071893
MGI SNP Detail
Chr10:13841364 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 745 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29339161
MGI SNP Detail
Chr10:13841380 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 761 bp downstream
SNP G/T G G G T
rs260860325
MGI SNP Detail
Chr10:13841385 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Gm66890 within coordinates of
Rr427855 within coordinates of
Tssr92405 766 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T
rs225228733
MGI SNP Detail
Chr10:13841460 Cpgi1318 within coordinates of
Gm56954 within coordinates of
Rr427855 within coordinates of
Tssr92405 841 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs243739769
MGI SNP Detail
Chr10:13841567 2900084C01Rik within coordinates of
Cpgi1318 within coordinates of
Rr427856 within coordinates of
Tssr92405 948 bp downstream
Tssr92411 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214546977
MGI SNP Detail
Chr10:13841629 2900084C01Rik within coordinates of
Cpgi1318 within coordinates of
Rr427856 within coordinates of
Tssr92405 1010 bp downstream
Tssr92413 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230345850
MGI SNP Detail
Chr10:13841670 2900084C01Rik within coordinates of
Cpgi1318 within coordinates of
Rr427856 within coordinates of
Tssr92405 1051 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253257205
MGI SNP Detail
Chr10:13841676 2900084C01Rik within coordinates of
Cpgi1318 within coordinates of
Rr427856 within coordinates of
Tssr92405 1057 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216224916
MGI SNP Detail
Chr10:13841740 Cpgi1318 within coordinates of
Rr427856 within coordinates of
Tssr92405 1121 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A G A A G G G A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs240290774
MGI SNP Detail
Chr10:13841796 Cpgi1318 within coordinates of
Rr427856 within coordinates of
Tssr92405 1177 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A G A A G G G A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs252607477
MGI SNP Detail
Chr10:13841879 Cpgi1318 within coordinates of
Hivep2 within coordinates of
Rr427856 within coordinates of
Tssr92405 1260 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C G C C G G G C C G C C C C G C C C C C C G C C C C C C G C C C C
rs29366115
MGI SNP Detail
Chr10:13842069 Cpgi1318 within coordinates of
Hivep2 within coordinates of
Rr427856 within coordinates of
Tssr92405 1450 bp downstream
SNP A/G G A G A A
rs229843643
MGI SNP Detail
Chr10:13842150 Cpgi1318 within coordinates of
Hivep2 within coordinates of
Rr427858 within coordinates of
Tssr92405 1531 bp downstream
SNP C/G/T C C C C C C C C C C C C C C C C C C C C C C C G G C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29376562
MGI SNP Detail
Chr10:13842399 Cpgi1318 within coordinates of
Hivep2 within coordinates of
Rr427858 within coordinates of
Tssr92405 1780 bp downstream
SNP C/T T C
rs222358254
MGI SNP Detail
Chr10:13842502 Cpgi1318 within coordinates of
Hivep2 within coordinates of
Rr427858 within coordinates of
Tssr92405 1883 bp downstream
Tssr96786 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C C C T T C T T T T T C T T T T T T C T T T T T T T T T T T
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Showing SNP(s) 1 - 69 of 69

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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