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Mouse SNP Summary
Symbol
Name
ID 		Tssr98252
transcription start site region 98252
MGI:6026019

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Showing SNP(s) 1 - 56 of 56

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219350421
MGI SNP Detail		 Chr10:77736313 Lrrc3 within coordinates of
Tssr98252 1949 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs239229540
MGI SNP Detail		 Chr10:77736440 Lrrc3 within coordinates of
Tssr98252 1822 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263767341
MGI SNP Detail		 Chr10:77736575 Lrrc3 within coordinates of
Tssr98252 1687 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224494795
MGI SNP Detail		 Chr10:77736733 Lrrc3 within coordinates of
Tssr98252 1529 bp downstream
 SNP C/T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C C T T T T T T C T
rs248755058
MGI SNP Detail		 Chr10:77736817 Lrrc3 within coordinates of
Tssr98252 1445 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs266016820
MGI SNP Detail		 Chr10:77737042 Lrrc3 within coordinates of
Tssr98252 1220 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224489300
MGI SNP Detail		 Chr10:77737243 Lrrc3 within coordinates of
Tssr98252 1019 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242365790
MGI SNP Detail		 Chr10:77737300 Lrrc3 within coordinates of
Tssr98252 962 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256568332
MGI SNP Detail		 Chr10:77737339 Lrrc3 within coordinates of
Tssr98252 923 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225478108
MGI SNP Detail		 Chr10:77737558 Lrrc3 within coordinates of
Tssr98252 704 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs246104502
MGI SNP Detail		 Chr10:77737626 Lrrc3 within coordinates of
Tssr98252 636 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs215535902
MGI SNP Detail		 Chr10:77737657 Lrrc3 within coordinates of
Tssr98252 605 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242867461
MGI SNP Detail		 Chr10:77737788 Cpgi1765 within coordinates of
Lrrc3 within coordinates of
Tssr98252 474 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253905898
MGI SNP Detail		 Chr10:77737834 Cpgi1765 within coordinates of
Lrrc3 within coordinates of
Tssr98252 428 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213202776
MGI SNP Detail		 Chr10:77737900 Cpgi1765 within coordinates of
Lrrc3 within coordinates of
Tssr98252 362 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs229695286
MGI SNP Detail		 Chr10:77737901 Cpgi1765 within coordinates of
Lrrc3 within coordinates of
Tssr98252 361 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251663113
MGI SNP Detail		 Chr10:77738013 Cpgi1765 within coordinates of
Lrrc3 within coordinates of
Tssr98252 249 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219408144
MGI SNP Detail		 Chr10:77738051 Cpgi1765 within coordinates of
Lrrc3 within coordinates of
Tssr98252 211 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A T A A A A
rs234564596
MGI SNP Detail		 Chr10:77738094 Cpgi1765 within coordinates of
Lrrc3 within coordinates of
Tssr98252 168 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G
rs262747848
MGI SNP Detail		 Chr10:77738383 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 88 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224484661
MGI SNP Detail		 Chr10:77738528 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 233 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251700454
MGI SNP Detail		 Chr10:77738573 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 278 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264228407
MGI SNP Detail		 Chr10:77738626 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 331 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219002487
MGI SNP Detail		 Chr10:77738685 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 390 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235988409
MGI SNP Detail		 Chr10:77738694 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 399 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256408600
MGI SNP Detail		 Chr10:77738733 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 438 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225321111
MGI SNP Detail		 Chr10:77738784 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 489 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253348948
MGI SNP Detail		 Chr10:77738822 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 527 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265540661
MGI SNP Detail		 Chr10:77738844 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 549 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233772534
MGI SNP Detail		 Chr10:77738845 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 550 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259066931
MGI SNP Detail		 Chr10:77738895 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 600 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs212896050
MGI SNP Detail		 Chr10:77739115 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 820 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs229866836
MGI SNP Detail		 Chr10:77739160 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 865 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs245677206
MGI SNP Detail		 Chr10:77739175 Cpgi1765 within coordinates of
Gm66819 within coordinates of
Tssr98252 880 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213345677
MGI SNP Detail		 Chr10:77739239 Cpgi1765 within coordinates of
Tssr98252 944 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs234407175
MGI SNP Detail		 Chr10:77739287 Gm66732 within coordinates of
Tssr98252 992 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs46805737
MGI SNP Detail		 Chr10:77739362 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1067 bp upstream
 SNP A/G G G A
rs51971446
MGI SNP Detail		 Chr10:77739386 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1091 bp upstream
 SNP C/T C T
rs258441642
MGI SNP Detail		 Chr10:77739420 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1125 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs218798207
MGI SNP Detail		 Chr10:77739529 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1234 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs240649158
MGI SNP Detail		 Chr10:77739560 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1265 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs263916117
MGI SNP Detail		 Chr10:77739666 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1371 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218872870
MGI SNP Detail		 Chr10:77739851 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1556 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236258707
MGI SNP Detail		 Chr10:77739856 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1561 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs250813330
MGI SNP Detail		 Chr10:77739898 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1603 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs219452586
MGI SNP Detail		 Chr10:77739945 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1650 bp upstream
 SNP A/G A A A A G A A A G A A A A A A A A G A A A A A A A A A G A A A A A A A G A A A G A G G A A G A A G
rs249176657
MGI SNP Detail		 Chr10:77739990 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1695 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs263280130
MGI SNP Detail		 Chr10:77739998 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1703 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A
rs579402636
MGI SNP Detail		 Chr10:77740054 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1759 bp upstream
 SNP A/C C A A A A A A C A A C C C A C A A C A C A A C
rs581779876
MGI SNP Detail		 Chr10:77740056 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1761 bp upstream
 SNP A/C C A A C A A A A C A A C C C A C A A C A C C A C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213460426
MGI SNP Detail		 Chr10:77740079 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1784 bp upstream
 SNP G/T T G
rs235153408
MGI SNP Detail		 Chr10:77740095 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1800 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247360178
MGI SNP Detail		 Chr10:77740146 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1851 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G A A A A A A A A A A A
rs585303826
MGI SNP Detail		 Chr10:77740157 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1862 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256673868
MGI SNP Detail		 Chr10:77740175 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1880 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224071990
MGI SNP Detail		 Chr10:77740215 Gm53590 within coordinates of
Gm66732 within coordinates of
Tssr98252 1920 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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