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Mouse SNP Summary
Symbol
Name
ID 		Tssr98507
transcription start site region 98507
MGI:6026274

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239413424
MGI SNP Detail		 Chr10:80631703 Tssr98507 1992 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs586144182
MGI SNP Detail		 Chr10:80631720 Tssr98507 1975 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255151538
MGI SNP Detail		 Chr10:80631741 Tssr98507 1954 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218005974
MGI SNP Detail		 Chr10:80631742 Tssr98507 1953 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238051375
MGI SNP Detail		 Chr10:80631761 Tssr98507 1934 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251172063
MGI SNP Detail		 Chr10:80631772 Tssr98507 1923 bp downstream
 SNP A/C/T C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C T C C C C
rs220370864
MGI SNP Detail		 Chr10:80631925 Tssr98507 1770 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247878913
MGI SNP Detail		 Chr10:80631990 Plekhj1 within coordinates of
Tssr98507 1705 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234284855
MGI SNP Detail		 Chr10:80632032 Plekhj1 within coordinates of
Tssr98507 1663 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248468376
MGI SNP Detail		 Chr10:80632063 Plekhj1 within coordinates of
Tssr98507 1632 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs254162769
MGI SNP Detail		 Chr10:80632127 Plekhj1 within coordinates of
Tssr98507 1568 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs224672171
MGI SNP Detail		 Chr10:80632286 Plekhj1 within coordinates of
Tssr98507 1409 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244206198
MGI SNP Detail		 Chr10:80632409 Plekhj1 within coordinates of
Tssr98507 1286 bp downstream
 SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T C T T T C T T T T T T C C T T T T T C T T C C
rs214758584
MGI SNP Detail		 Chr10:80632471 Plekhj1 within coordinates of
Tssr98507 1224 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47468164
MGI SNP Detail		 Chr10:80632502 Plekhj1 within coordinates of
Tssr98507 1193 bp downstream
 SNP C/T T T T T T T T T C T
rs256839606
MGI SNP Detail		 Chr10:80632547 Plekhj1 within coordinates of
Tssr98507 1148 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs216233284
MGI SNP Detail		 Chr10:80632666 Plekhj1 within coordinates of
Tssr98507 1029 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs8243857
MGI SNP Detail		 Chr10:80632749 Plekhj1 within coordinates of
Tssr98507 946 bp downstream
 SNP A/G A A A A A A A A A A G A A A G A A A
rs254997185
MGI SNP Detail		 Chr10:80632766 Plekhj1 within coordinates of
Tssr98507 929 bp downstream
 SNP A/T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T A A
rs211962880
MGI SNP Detail		 Chr10:80632792 Plekhj1 within coordinates of
Tssr98507 903 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230460762
MGI SNP Detail		 Chr10:80632954 Plekhj1 within coordinates of
Tssr98507 741 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251222140
MGI SNP Detail		 Chr10:80632976 Plekhj1 within coordinates of
Tssr98507 719 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223104553
MGI SNP Detail		 Chr10:80633006 Plekhj1 within coordinates of
Tssr98507 689 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245415965
MGI SNP Detail		 Chr10:80633013 Plekhj1 within coordinates of
Tssr98507 682 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs263399766
MGI SNP Detail		 Chr10:80633032 Plekhj1 within coordinates of
Tssr98507 663 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225787259
MGI SNP Detail		 Chr10:80633067 Plekhj1 within coordinates of
Tssr98507 628 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251649772
MGI SNP Detail		 Chr10:80633077 Plekhj1 within coordinates of
Tssr98507 618 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254036125
MGI SNP Detail		 Chr10:80633144 Plekhj1 within coordinates of
Tssr98507 551 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224744936
MGI SNP Detail		 Chr10:80633221 Plekhj1 within coordinates of
Tssr98507 474 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs237848174
MGI SNP Detail		 Chr10:80633223 Plekhj1 within coordinates of
Tssr98507 472 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs8243859
MGI SNP Detail		 Chr10:80633248 Plekhj1 within coordinates of
Tssr98507 447 bp downstream
 SNP A/G G G G G G G G A G G
rs8243858
MGI SNP Detail		 Chr10:80633262 Plekhj1 within coordinates of
Tssr98507 433 bp downstream
 SNP A/C A A A A A A A C A C A C
rs253489913
MGI SNP Detail		 Chr10:80633291 Plekhj1 within coordinates of
Tssr98507 404 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216800108
MGI SNP Detail		 Chr10:80633355 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 340 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232793290
MGI SNP Detail		 Chr10:80633417 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 278 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248598952
MGI SNP Detail		 Chr10:80633439 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 256 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211820410
MGI SNP Detail		 Chr10:80633495 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 200 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230517892
MGI SNP Detail		 Chr10:80633509 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 186 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs51964657
MGI SNP Detail		 Chr10:80633637 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 58 bp downstream
 SNP A/C C C C A C
rs214564673
MGI SNP Detail		 Chr10:80634168 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 443 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs8243860
MGI SNP Detail		 Chr10:80634172 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 447 bp upstream
 SNP C/T T T T T T T T C T T
rs579284459
MGI SNP Detail		 Chr10:80634179 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 454 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259414878
MGI SNP Detail		 Chr10:80634180 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 455 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs226302193
MGI SNP Detail		 Chr10:80634181 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 456 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235250031
MGI SNP Detail		 Chr10:80634227 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 502 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs248370008
MGI SNP Detail		 Chr10:80634228 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 503 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs8243863
MGI SNP Detail		 Chr10:80634236 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 511 bp upstream
 SNP C/T C C C C T C
rs8243862
MGI SNP Detail		 Chr10:80634332 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 607 bp upstream
Tssr98513 within coordinates of
 SNP C/T T T T T T T T C T T C T T
rs265365301
MGI SNP Detail		 Chr10:80634378 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 653 bp upstream
Tssr98513 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs224433472
MGI SNP Detail		 Chr10:80634379 Cpgi1908 within coordinates of
Plekhj1 within coordinates of
Tssr98507 654 bp upstream
Tssr98513 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249639592
MGI SNP Detail		 Chr10:80634432 Cpgi1908 within coordinates of
Tssr98507 707 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A C A A A A A A C A A A A A A C A A A A
rs8243861
MGI SNP Detail		 Chr10:80634551 Cpgi1908 within coordinates of
Tssr94610 within coordinates of
Tssr98507 826 bp upstream
 SNP A/C C C C C C C C A C C
rs233718946
MGI SNP Detail		 Chr10:80634566 Cpgi1908 within coordinates of
Tssr94610 within coordinates of
Tssr98507 841 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248460890
MGI SNP Detail		 Chr10:80634599 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 874 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs255861403
MGI SNP Detail		 Chr10:80634600 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 875 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224764149
MGI SNP Detail		 Chr10:80634639 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 914 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244751231
MGI SNP Detail		 Chr10:80634692 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 967 bp upstream
Tssr98514 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215009044
MGI SNP Detail		 Chr10:80634762 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr94611 within coordinates of
Tssr98507 1037 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs46562507
MGI SNP Detail		 Chr10:80634881 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 1156 bp upstream
 SNP A/G G G G A G
rs258263287
MGI SNP Detail		 Chr10:80634917 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 1192 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217957987
MGI SNP Detail		 Chr10:80635033 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 1308 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs235304935
MGI SNP Detail		 Chr10:80635080 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 1355 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs46540654
MGI SNP Detail		 Chr10:80635100 Cpgi1908 within coordinates of
Sf3a2 within coordinates of
Tssr98507 1375 bp upstream
 SNP C/G G G G C G C
rs218696712
MGI SNP Detail		 Chr10:80635406 Sf3a2 within coordinates of
Tssr98507 1681 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231586936
MGI SNP Detail		 Chr10:80635433 Sf3a2 within coordinates of
Tssr98507 1708 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs258011587
MGI SNP Detail		 Chr10:80635508 Sf3a2 within coordinates of
Tssr98507 1783 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs224575233
MGI SNP Detail		 Chr10:80635533 Sf3a2 within coordinates of
Tssr98507 1808 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246713772
MGI SNP Detail		 Chr10:80635536 Sf3a2 within coordinates of
Tssr98507 1811 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs266033754
MGI SNP Detail		 Chr10:80635591 Sf3a2 within coordinates of
Tssr98507 1866 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs223806371
MGI SNP Detail		 Chr10:80635616 Sf3a2 within coordinates of
Tssr98507 1891 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 70 of 70
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory