About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr100254
transcription start site region 100254
MGI:6028021

<< first < prev1 next > last >>
Showing SNP(s) 1 - 50 of 50

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263542857
MGI SNP Detail		 Chr11:6364459 Tssr100254 1799 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214012266
MGI SNP Detail		 Chr11:6364525 Tssr100254 1733 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232344608
MGI SNP Detail		 Chr11:6364569 Tssr100254 1689 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248406426
MGI SNP Detail		 Chr11:6364570 Tssr100254 1688 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218933558
MGI SNP Detail		 Chr11:6364660 Rr246944 within coordinates of
Tssr100254 1598 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250368921
MGI SNP Detail		 Chr11:6364764 Rr246944 within coordinates of
Tssr100254 1494 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261051865
MGI SNP Detail		 Chr11:6364884 Rr246944 within coordinates of
Tssr100254 1374 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224244554
MGI SNP Detail		 Chr11:6364891 Rr246944 within coordinates of
Tssr100254 1367 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs49571982
MGI SNP Detail		 Chr11:6364937 Rr246944 within coordinates of
Tssr100254 1321 bp upstream
 SNP C/T T T C
rs257493441
MGI SNP Detail		 Chr11:6365043 Rr246944 within coordinates of
Tssr100254 1215 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226553389
MGI SNP Detail		 Chr11:6365085 Rr246944 within coordinates of
Tssr100254 1173 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237201781
MGI SNP Detail		 Chr11:6365119 Rr246944 within coordinates of
Tssr100254 1139 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256637868
MGI SNP Detail		 Chr11:6365510 Cpgi2558 within coordinates of
Gm71788 within coordinates of
Rr246944 within coordinates of
Tssr100254 748 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs228503421
MGI SNP Detail		 Chr11:6365608 Cpgi2558 within coordinates of
Gm71788 within coordinates of
Rr246944 within coordinates of
Tssr100254 650 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225023367
MGI SNP Detail		 Chr11:6365685 Cpgi2558 within coordinates of
Gm71788 within coordinates of
Rr246944 within coordinates of
Tssr100254 573 bp upstream
Tssr106715 within coordinates of
 SNP C/T T C
rs215415457
MGI SNP Detail		 Chr11:6365752 Cpgi2558 within coordinates of
Rr246944 within coordinates of
Tssr100254 506 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232676652
MGI SNP Detail		 Chr11:6365756 Cpgi2558 within coordinates of
Rr246944 within coordinates of
Tssr100254 502 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250384159
MGI SNP Detail		 Chr11:6366002 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 256 bp upstream
 SNP A/C A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A C
rs214121222
MGI SNP Detail		 Chr11:6366014 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 244 bp upstream
 SNP C/T C C C C C T T C C C C C C C C C C C C C C C C C C C C T T C C C C C C C T T T C C T C C C C C C
rs6157412
MGI SNP Detail		 Chr11:6366039 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 219 bp upstream
 SNP C/T C T
rs232445453
MGI SNP Detail		 Chr11:6366078 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 180 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6158120
MGI SNP Detail		 Chr11:6366191 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 67 bp upstream
 SNP C/T T C
rs213159386
MGI SNP Detail		 Chr11:6366196 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 62 bp upstream
 SNP A/G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G
rs239780354
MGI SNP Detail		 Chr11:6366208 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 50 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264292617
MGI SNP Detail		 Chr11:6366220 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 38 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs6159177
MGI SNP Detail		 Chr11:6366365 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 48 bp downstream
 SNP A/G G A G G A
rs249154364
MGI SNP Detail		 Chr11:6366399 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 82 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217761303
MGI SNP Detail		 Chr11:6366400 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 83 bp downstream
 SNP C/T T C
rs242449058
MGI SNP Detail		 Chr11:6366451 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 134 bp downstream
 SNP A/G A G
rs237166557
MGI SNP Detail		 Chr11:6366693 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 376 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256795848
MGI SNP Detail		 Chr11:6366779 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 462 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225989035
MGI SNP Detail		 Chr11:6366860 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 543 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248225325
MGI SNP Detail		 Chr11:6366864 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 547 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs265434620
MGI SNP Detail		 Chr11:6366897 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 580 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232159709
MGI SNP Detail		 Chr11:6366909 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 592 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs243632391
MGI SNP Detail		 Chr11:6367057 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 740 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C C A A A A A A A A A A A A A A A A A A A C A A A A
rs255915877
MGI SNP Detail		 Chr11:6367171 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 854 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs223231304
MGI SNP Detail		 Chr11:6367227 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 910 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253419035
MGI SNP Detail		 Chr11:6367330 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1013 bp downstream
 SNP A/T T A
rs213262647
MGI SNP Detail		 Chr11:6367425 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1108 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242383069
MGI SNP Detail		 Chr11:6367429 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1112 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G G G G G G G G A G G G G
rs254990889
MGI SNP Detail		 Chr11:6367468 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1151 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs216562389
MGI SNP Detail		 Chr11:6367507 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1190 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238821934
MGI SNP Detail		 Chr11:6367775 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1458 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251418272
MGI SNP Detail		 Chr11:6367952 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1635 bp downstream
 SNP A/G G G G A A A G G G G A A A A G G G G A G G G G G G G G G G A G G G G A A G G G A G G G A G G G G G A G A G
rs220338242
MGI SNP Detail		 Chr11:6368065 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1748 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586316790
MGI SNP Detail		 Chr11:6368076 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1759 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229957967
MGI SNP Detail		 Chr11:6368178 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1861 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs250382723
MGI SNP Detail		 Chr11:6368180 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1863 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs580605318
MGI SNP Detail		 Chr11:6368200 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1883 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A A A A A A A A A A A A A A A A G A A A A
<< first < prev1 next > last >>
Showing SNP(s) 1 - 50 of 50
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
Building initial tooltip...