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Mouse SNP Summary
Symbol
Name
ID 		Tssr100254
transcription start site region 100254
MGI:6028021

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263542857
MGI SNP Detail		 Chr11:6364459 Tssr100254 1799 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214012266
MGI SNP Detail		 Chr11:6364525 Tssr100254 1733 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232344608
MGI SNP Detail		 Chr11:6364569 Tssr100254 1689 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248406426
MGI SNP Detail		 Chr11:6364570 Tssr100254 1688 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218933558
MGI SNP Detail		 Chr11:6364660 Rr246944 within coordinates of
Tssr100254 1598 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250368921
MGI SNP Detail		 Chr11:6364764 Rr246944 within coordinates of
Tssr100254 1494 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261051865
MGI SNP Detail		 Chr11:6364884 Rr246944 within coordinates of
Tssr100254 1374 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224244554
MGI SNP Detail		 Chr11:6364891 Rr246944 within coordinates of
Tssr100254 1367 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs49571982
MGI SNP Detail		 Chr11:6364937 Rr246944 within coordinates of
Tssr100254 1321 bp upstream
 SNP C/T T T C
rs257493441
MGI SNP Detail		 Chr11:6365043 Rr246944 within coordinates of
Tssr100254 1215 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226553389
MGI SNP Detail		 Chr11:6365085 Rr246944 within coordinates of
Tssr100254 1173 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237201781
MGI SNP Detail		 Chr11:6365119 Rr246944 within coordinates of
Tssr100254 1139 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256637868
MGI SNP Detail		 Chr11:6365510 Cpgi2558 within coordinates of
Gm71788 within coordinates of
Rr246944 within coordinates of
Tssr100254 748 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs228503421
MGI SNP Detail		 Chr11:6365608 Cpgi2558 within coordinates of
Gm71788 within coordinates of
Rr246944 within coordinates of
Tssr100254 650 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225023367
MGI SNP Detail		 Chr11:6365685 Cpgi2558 within coordinates of
Gm71788 within coordinates of
Rr246944 within coordinates of
Tssr100254 573 bp upstream
Tssr106715 within coordinates of
 SNP C/T T C
rs215415457
MGI SNP Detail		 Chr11:6365752 Cpgi2558 within coordinates of
Rr246944 within coordinates of
Tssr100254 506 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232676652
MGI SNP Detail		 Chr11:6365756 Cpgi2558 within coordinates of
Rr246944 within coordinates of
Tssr100254 502 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250384159
MGI SNP Detail		 Chr11:6366002 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 256 bp upstream
 SNP A/C A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A C
rs214121222
MGI SNP Detail		 Chr11:6366014 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 244 bp upstream
 SNP C/T C C C C C T T C C C C C C C C C C C C C C C C C C C C T T C C C C C C C T T T C C T C C C C C C
rs6157412
MGI SNP Detail		 Chr11:6366039 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 219 bp upstream
 SNP C/T C T
rs232445453
MGI SNP Detail		 Chr11:6366078 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Rr402411 within coordinates of
Tssr100254 180 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6158120
MGI SNP Detail		 Chr11:6366191 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 67 bp upstream
 SNP C/T T C
rs213159386
MGI SNP Detail		 Chr11:6366196 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 62 bp upstream
 SNP A/G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G
rs239780354
MGI SNP Detail		 Chr11:6366208 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 50 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs264292617
MGI SNP Detail		 Chr11:6366220 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 38 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs6159177
MGI SNP Detail		 Chr11:6366365 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 48 bp downstream
 SNP A/G G A G G A
rs249154364
MGI SNP Detail		 Chr11:6366399 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 82 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217761303
MGI SNP Detail		 Chr11:6366400 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 83 bp downstream
 SNP C/T T C
rs242449058
MGI SNP Detail		 Chr11:6366451 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 134 bp downstream
 SNP A/G A G
rs237166557
MGI SNP Detail		 Chr11:6366693 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 376 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256795848
MGI SNP Detail		 Chr11:6366779 Cpgi2558 within coordinates of
Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 462 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225989035
MGI SNP Detail		 Chr11:6366860 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 543 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248225325
MGI SNP Detail		 Chr11:6366864 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 547 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs265434620
MGI SNP Detail		 Chr11:6366897 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 580 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232159709
MGI SNP Detail		 Chr11:6366909 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 592 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs243632391
MGI SNP Detail		 Chr11:6367057 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 740 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C C A A A A A A A A A A A A A A A A A A A C A A A A
rs255915877
MGI SNP Detail		 Chr11:6367171 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 854 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs223231304
MGI SNP Detail		 Chr11:6367227 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 910 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253419035
MGI SNP Detail		 Chr11:6367330 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1013 bp downstream
 SNP A/T T A
rs213262647
MGI SNP Detail		 Chr11:6367425 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1108 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242383069
MGI SNP Detail		 Chr11:6367429 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1112 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G G G G G G G G A G G G G
rs254990889
MGI SNP Detail		 Chr11:6367468 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1151 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs216562389
MGI SNP Detail		 Chr11:6367507 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1190 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238821934
MGI SNP Detail		 Chr11:6367775 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1458 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251418272
MGI SNP Detail		 Chr11:6367952 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1635 bp downstream
 SNP A/G G G G A A A G G G G A A A A G G G G A G G G G G G G G G G A G G G G A A G G G A G G G A G G G G G A G A G
rs220338242
MGI SNP Detail		 Chr11:6368065 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1748 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586316790
MGI SNP Detail		 Chr11:6368076 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1759 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229957967
MGI SNP Detail		 Chr11:6368178 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1861 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs250382723
MGI SNP Detail		 Chr11:6368180 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1863 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs580605318
MGI SNP Detail		 Chr11:6368200 Ppia within coordinates of
Rr246944 within coordinates of
Tssr100254 1883 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 50 of 50
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory