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Mouse SNP Summary
Symbol
Name
ID 		Tssr100714
transcription start site region 100714
MGI:6028481

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Showing SNP(s) 1 - 62 of 62

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs587166634
MGI SNP Detail		 Chr11:29452010 Ccdc88a within coordinates of
Tssr100714 1967 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579490631
MGI SNP Detail		 Chr11:29452063 Ccdc88a within coordinates of
Tssr100714 1914 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs582869034
MGI SNP Detail		 Chr11:29452080 Ccdc88a within coordinates of
Tssr100714 1897 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237051949
MGI SNP Detail		 Chr11:29452161 Ccdc88a within coordinates of
Tssr100714 1816 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29435555
MGI SNP Detail		 Chr11:29452165 Ccdc88a within coordinates of
Tssr100714 1812 bp upstream
 SNP A/T A A T A T T A
rs212996253
MGI SNP Detail		 Chr11:29452180 Ccdc88a within coordinates of
Tssr100714 1797 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs236424144
MGI SNP Detail		 Chr11:29452252 Ccdc88a within coordinates of
Tssr100714 1725 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586723053
MGI SNP Detail		 Chr11:29452305 Ccdc88a within coordinates of
Tssr100714 1672 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs581104763
MGI SNP Detail		 Chr11:29452316 Ccdc88a within coordinates of
Tssr100714 1661 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A G A A A A
rs584756391
MGI SNP Detail		 Chr11:29452317 Ccdc88a within coordinates of
Tssr100714 1660 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587105325
MGI SNP Detail		 Chr11:29452328 Ccdc88a within coordinates of
Tssr100714 1649 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581434654
MGI SNP Detail		 Chr11:29452353 Ccdc88a within coordinates of
Tssr100714 1624 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585060745
MGI SNP Detail		 Chr11:29452383 Ccdc88a within coordinates of
Tssr100714 1594 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29431071
MGI SNP Detail		 Chr11:29452397 Ccdc88a within coordinates of
Tssr100714 1580 bp upstream
 SNP C/G G C C C G
rs579299166
MGI SNP Detail		 Chr11:29452400 Ccdc88a within coordinates of
Tssr100714 1577 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222511334
MGI SNP Detail		 Chr11:29452483 Ccdc88a within coordinates of
Tssr100714 1494 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241190071
MGI SNP Detail		 Chr11:29452508 Ccdc88a within coordinates of
Tssr100714 1469 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs224435879
MGI SNP Detail		 Chr11:29452571 Ccdc88a within coordinates of
Tssr100714 1406 bp upstream
 SNP A/T T A
rs220300028
MGI SNP Detail		 Chr11:29452615 Ccdc88a within coordinates of
Tssr100714 1362 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242740350
MGI SNP Detail		 Chr11:29452655 Ccdc88a within coordinates of
Tssr100714 1322 bp upstream
 SNP A/G G G G G G G A A A A G G G G G G G G G G G G G G G A G G G A G A G G G G G G G G G G G G G G G G G G G G A
rs582887444
MGI SNP Detail		 Chr11:29452695 Ccdc88a within coordinates of
Tssr100714 1282 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs264766594
MGI SNP Detail		 Chr11:29452760 Ccdc88a within coordinates of
Tssr100714 1217 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583988966
MGI SNP Detail		 Chr11:29452780 Ccdc88a within coordinates of
Tssr100714 1197 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227283817
MGI SNP Detail		 Chr11:29452865 Ccdc88a within coordinates of
Tssr100714 1112 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250876418
MGI SNP Detail		 Chr11:29452969 Ccdc88a within coordinates of
Tssr100714 1008 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29442832
MGI SNP Detail		 Chr11:29453030 Ccdc88a within coordinates of
Tssr100714 947 bp upstream
 SNP C/T T T C T C C T
rs228734419
MGI SNP Detail		 Chr11:29453157 Ccdc88a within coordinates of
Tssr100714 820 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs246250675
MGI SNP Detail		 Chr11:29453190 Ccdc88a within coordinates of
Tssr100714 787 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs26871528
MGI SNP Detail		 Chr11:29453208 Ccdc88a within coordinates of
Tssr100714 769 bp upstream
 SNP A/C C C C A A C C C A C C C C C C
rs29396038
MGI SNP Detail		 Chr11:29453254 Ccdc88a within coordinates of
Tssr100714 723 bp upstream
 SNP A/C C C A C A A C
rs251081397
MGI SNP Detail		 Chr11:29453290 Ccdc88a within coordinates of
Tssr100714 687 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213301290
MGI SNP Detail		 Chr11:29453291 Ccdc88a within coordinates of
Tssr100714 686 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs234770629
MGI SNP Detail		 Chr11:29453293 Ccdc88a within coordinates of
Tssr100714 684 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255402475
MGI SNP Detail		 Chr11:29453696 Ccdc88a within coordinates of
Tssr100714 281 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs216865562
MGI SNP Detail		 Chr11:29453743 Ccdc88a within coordinates of
Tssr100714 234 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs26871527
MGI SNP Detail		 Chr11:29453752 Ccdc88a within coordinates of
Tssr100714 225 bp upstream
 SNP A/G A A A A A A A G A
rs252739674
MGI SNP Detail		 Chr11:29453797 Ccdc88a within coordinates of
Tssr100714 180 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs223258366
MGI SNP Detail		 Chr11:29453914 Ccdc88a within coordinates of
Rr239823 within coordinates of
Tssr100714 63 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245879175
MGI SNP Detail		 Chr11:29454289 Ccdc88a within coordinates of
Tssr100714 300 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256273233
MGI SNP Detail		 Chr11:29454302 Ccdc88a within coordinates of
Tssr100714 313 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs26871526
MGI SNP Detail		 Chr11:29454358 Ccdc88a within coordinates of
Tssr100714 369 bp downstream
 SNP C/T T T C C T T C T T C T C C T C T T T T
rs241280832
MGI SNP Detail		 Chr11:29454398 Ccdc88a within coordinates of
Tssr100714 409 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs258693578
MGI SNP Detail		 Chr11:29454448 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 459 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs26871525
MGI SNP Detail		 Chr11:29454646 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 657 bp downstream
 SNP A/G A A G G A A G A G G A G G G G A G A A
rs240299406
MGI SNP Detail		 Chr11:29454676 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 687 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257491021
MGI SNP Detail		 Chr11:29454696 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 707 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231169740
MGI SNP Detail		 Chr11:29454704 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 715 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255694709
MGI SNP Detail		 Chr11:29454757 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 768 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262158448
MGI SNP Detail		 Chr11:29454814 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 825 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29437098
MGI SNP Detail		 Chr11:29454927 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 938 bp downstream
 SNP A/G G A G A A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248929543
MGI SNP Detail		 Chr11:29454952 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 963 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs216832372
MGI SNP Detail		 Chr11:29454966 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 977 bp downstream
 SNP A/G A A A A A A G G G G A A A A A A A A A A A A A A A G A A A G A G A A A A A A A A A A A A A A A A A A A A G
rs234917130
MGI SNP Detail		 Chr11:29455004 Ccdc88a within coordinates of
Rr249497 within coordinates of
Tssr100714 1015 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246676648
MGI SNP Detail		 Chr11:29455299 Ccdc88a within coordinates of
Tssr100714 1310 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs26871524
MGI SNP Detail		 Chr11:29455353 Ccdc88a within coordinates of
Tssr100714 1364 bp downstream
 SNP A/C C C A C C A C A C A C C C
rs236108671
MGI SNP Detail		 Chr11:29455370 Ccdc88a within coordinates of
Tssr100714 1381 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261515035
MGI SNP Detail		 Chr11:29455566 Ccdc88a within coordinates of
Tssr100714 1577 bp downstream
Tssr100715 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220416964
MGI SNP Detail		 Chr11:29455713 Ccdc88a within coordinates of
Tssr100714 1724 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29480080
MGI SNP Detail		 Chr11:29455740 Ccdc88a within coordinates of
Tssr100714 1751 bp downstream
 SNP C/T C T C T T C
rs252408729
MGI SNP Detail		 Chr11:29455743 Ccdc88a within coordinates of
Tssr100714 1754 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29452827
MGI SNP Detail		 Chr11:29455881 Ccdc88a within coordinates of
Rr239824 within coordinates of
Tssr100714 1892 bp downstream
 SNP C/G C C G G G C
rs585863136
MGI SNP Detail		 Chr11:29455978 Ccdc88a within coordinates of
Rr239824 within coordinates of
Tssr100714 1989 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
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Showing SNP(s) 1 - 62 of 62
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory