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Mouse SNP Summary
Symbol
Name
ID 		Tssr101879
transcription start site region 101879
MGI:6029646

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Showing SNP(s) 1 - 38 of 38

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212231306
MGI SNP Detail		 Chr11:60028892 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 2000 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236597361
MGI SNP Detail		 Chr11:60028994 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1898 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs248076254
MGI SNP Detail		 Chr11:60029029 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1863 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs216004574
MGI SNP Detail		 Chr11:60029137 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1755 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs238226389
MGI SNP Detail		 Chr11:60029144 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1748 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs262664618
MGI SNP Detail		 Chr11:60029166 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1726 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222801130
MGI SNP Detail		 Chr11:60029289 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1603 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237467683
MGI SNP Detail		 Chr11:60029303 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1589 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs248475629
MGI SNP Detail		 Chr11:60029382 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1510 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222441575
MGI SNP Detail		 Chr11:60029401 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1491 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs51359360
MGI SNP Detail		 Chr11:60029444 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1448 bp upstream
 SNP C/T T T T C T T T T T T C C T T T T T T T T C T C T T T T C T T T T T C T T T T T T C T T T T C T T T T T T T
rs251621512
MGI SNP Detail		 Chr11:60029477 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1415 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs579325743
MGI SNP Detail		 Chr11:60029495 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1397 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs582836285
MGI SNP Detail		 Chr11:60029496 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Tssr101879 1396 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220475130
MGI SNP Detail		 Chr11:60029608 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1284 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244036436
MGI SNP Detail		 Chr11:60029645 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1247 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265067680
MGI SNP Detail		 Chr11:60029714 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1178 bp upstream
 SNP A/C A A A C A A A A A A C C A A A A A A A C C A C A A A A C A A A A A C A A A A A A C A A A A C A A C A A A A
rs228769182
MGI SNP Detail		 Chr11:60029807 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1085 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243846129
MGI SNP Detail		 Chr11:60030010 Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 882 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs261202223
MGI SNP Detail		 Chr11:60030115 Cpgi2977 within coordinates of
Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 777 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229354366
MGI SNP Detail		 Chr11:60030142 Cpgi2977 within coordinates of
Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 750 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248201486
MGI SNP Detail		 Chr11:60030155 Cpgi2977 within coordinates of
Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 737 bp upstream
 SNP C/T T T T C T T T T T T C C T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T C T T C T T T T
rs215937722
MGI SNP Detail		 Chr11:60030157 Cpgi2977 within coordinates of
Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 735 bp upstream
 SNP A/C C C C A C C C C C C A A C C C C C C C C A C A C C C C A C C C C C A C C C C C C A C C C C A C C C C C C C
rs232241921
MGI SNP Detail		 Chr11:60030284 Cpgi2977 within coordinates of
Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 608 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251632842
MGI SNP Detail		 Chr11:60030955 Cpgi2977 within coordinates of
Gm53710 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 49 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214635992
MGI SNP Detail		 Chr11:60031323 Cpgi2977 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 417 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs48099043
MGI SNP Detail		 Chr11:60031324 Cpgi2977 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 418 bp downstream
 SNP C/G G C
rs248408767
MGI SNP Detail		 Chr11:60031485 Cpgi2977 within coordinates of
Gm72548 within coordinates of
Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 579 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs251754575
MGI SNP Detail		 Chr11:60031932 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1026 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs223866235
MGI SNP Detail		 Chr11:60032192 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1286 bp downstream
 SNP C/T T T T C T T T T T T C C T T T T T T T C C T C T T T T C T T T T T C T T T T T T C T T T T C T T C T T T T
rs246492707
MGI SNP Detail		 Chr11:60032202 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1296 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256811568
MGI SNP Detail		 Chr11:60032354 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1448 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48404453
MGI SNP Detail		 Chr11:60032453 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1547 bp downstream
 SNP C/T T C
rs221025258
MGI SNP Detail		 Chr11:60032701 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1795 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs261462192
MGI SNP Detail		 Chr11:60032733 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1827 bp downstream
 SNP T T T
rs261151525
MGI SNP Detail		 Chr11:60032741 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1835 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228477702
MGI SNP Detail		 Chr11:60032891 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1985 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs242131512
MGI SNP Detail		 Chr11:60032903 Rai1 within coordinates of
Rr246864 within coordinates of
Tssr101879 1997 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 38 of 38
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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