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Mouse SNP Summary
Symbol
Name
ID
Tssr104244
transcription start site region 104244
MGI:6032011

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Showing SNP(s) 1 - 61 of 61

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250219969
MGI SNP Detail
Alliance Variant
Chr11:94833758 Col1a1 Intron
Tssr104244 1973 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217982251
MGI SNP Detail
Alliance Variant
Chr11:94833837 Col1a1 Coding-Synonymous
Tssr104244 1894 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A G G A A A A A A A A A A A A A A A A A A A A A A A
rs27060354
MGI SNP Detail
Alliance Variant
Chr11:94833968 Col1a1 Intron
Tssr104244 1763 bp upstream
SNP C/T C C C C C C C C C C C C C C T
rs27060353
MGI SNP Detail
Alliance Variant
Chr11:94833996 Col1a1 Intron
Tssr104244 1735 bp upstream
SNP C/T C T T T C C C C C T C T
rs226176090
MGI SNP Detail
Alliance Variant
Chr11:94834053 Col1a1 Intron
Tssr104244 1678 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29400013
MGI SNP Detail
Alliance Variant
Chr11:94834065 Col1a1 Intron
Tssr104244 1666 bp upstream
SNP A/C A C A C A
rs257262861
MGI SNP Detail
Alliance Variant
Chr11:94834104 Col1a1 Intron
Tssr104244 1627 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226175094
MGI SNP Detail
Alliance Variant
Chr11:94834141 Col1a1 Intron
Tssr104244 1590 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237720091
MGI SNP Detail
Alliance Variant
Chr11:94834146 Col1a1 Intron
Tssr104244 1585 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254762388
MGI SNP Detail
Alliance Variant
Chr11:94834155 Col1a1 Intron
Tssr104244 1576 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A
rs228536712
MGI SNP Detail
Alliance Variant
Chr11:94834231 Col1a1 Coding-Synonymous
Tssr104244 1500 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254584914
MGI SNP Detail
Alliance Variant
Chr11:94834305 Col1a1 Intron
Tssr104244 1426 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229090587
MGI SNP Detail
Alliance Variant
Chr11:94834330 Col1a1 Intron
Tssr104244 1401 bp upstream
SNP C/T C T
rs249214540
MGI SNP Detail
Alliance Variant
Chr11:94834338 Col1a1 Intron
Tssr104244 1393 bp upstream
SNP G/T G T
rs107965503
MGI SNP Detail
Alliance Variant
Chr11:94834341 Col1a1 Intron
Tssr104244 1390 bp upstream
SNP A/C C A C A C
rs231253680
MGI SNP Detail
Alliance Variant
Chr11:94834389 Col1a1 Intron
Tssr104244 1342 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250138407
MGI SNP Detail
Alliance Variant
Chr11:94834594 Col1a1 Coding-Synonymous
Tssr104241 within coordinates of
Tssr104244 1137 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27060352
MGI SNP Detail
Alliance Variant
Chr11:94834680 Col1a1 Intron
Tssr104244 1051 bp upstream
SNP G/T T T T T T T G T T G T T T T G
rs27060351
MGI SNP Detail
Alliance Variant
Chr11:94834691 Col1a1 Intron
Tssr104244 1040 bp upstream
SNP C/T C T T C C T C C C C T C C C C C C
rs29467811
MGI SNP Detail
Alliance Variant
Chr11:94834718 Col1a1 Intron
Tssr104244 1013 bp upstream
SNP G/T T T G T T G T
rs226521243
MGI SNP Detail
Alliance Variant
Chr11:94834856 Col1a1 Intron
Tssr104244 875 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs246838489
MGI SNP Detail
Alliance Variant
Chr11:94834880 Col1a1 Intron
Tssr104244 851 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29457328
MGI SNP Detail
Alliance Variant
Chr11:94835064 Col1a1 Intron
Tssr104244 667 bp upstream
SNP A/G G G A G G A A
rs220400977
MGI SNP Detail
Alliance Variant
Chr11:94835143 Col1a1 Intron
Tssr104244 588 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27060350
MGI SNP Detail
Alliance Variant
Chr11:94835195 Col1a1 Coding-Synonymous
Tssr104242 within coordinates of
Tssr104244 536 bp upstream
SNP A/G G G G G G G A G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254725400
MGI SNP Detail
Alliance Variant
Chr11:94835213 Col1a1 Coding-Synonymous
Tssr104244 518 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227815187
MGI SNP Detail
Alliance Variant
Chr11:94835343 Col1a1 Intron
Tssr104244 388 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs583445632
MGI SNP Detail
Alliance Variant
Chr11:94835378 Col1a1 Intron
Tssr104244 353 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580978645
MGI SNP Detail
Alliance Variant
Chr11:94835380 Col1a1 Intron
Tssr104244 351 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs584472590
MGI SNP Detail
Alliance Variant
Chr11:94835385 Col1a1 Intron
Tssr104244 346 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs251624447
MGI SNP Detail
Alliance Variant
Chr11:94835450 Col1a1 Coding-Synonymous
Tssr104244 281 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs263946095
MGI SNP Detail
Alliance Variant
Chr11:94835512 Col1a1 Intron
Tssr104244 219 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs232956157
MGI SNP Detail
Alliance Variant
Chr11:94835671 Col1a1 Intron
Tssr104244 60 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246382278
MGI SNP Detail
Alliance Variant
Chr11:94835726 Col1a1 Intron
Tssr104244 5 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27060349
MGI SNP Detail
Alliance Variant
Chr11:94835914 Col1a1 Intron
Tssr104244 152 bp downstream
SNP A/T A T T T A T T A T T T T T A T T T
rs225792063
MGI SNP Detail
Alliance Variant
Chr11:94835922 Col1a1 Intron
Tssr104244 160 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27060348
MGI SNP Detail
Alliance Variant
Chr11:94835985 Col1a1 Intron
Tssr104244 223 bp downstream
SNP C/T C C C T C C C C T T C C T C C T T
rs211773555
MGI SNP Detail
Alliance Variant
Chr11:94836061 Col1a1 Intron
Tssr104244 299 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs240032017
MGI SNP Detail
Alliance Variant
Chr11:94836070 Col1a1 Intron
Tssr104244 308 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs263664457
MGI SNP Detail
Alliance Variant
Chr11:94836071 Col1a1 Intron
Tssr104244 309 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218373315
MGI SNP Detail
Alliance Variant
Chr11:94836084 Col1a1 Intron
Tssr104244 322 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs213073263
MGI SNP Detail
Alliance Variant
Chr11:94836143 Col1a1 Intron
Tssr104244 381 bp downstream
SNP C/G C G
rs251502807
MGI SNP Detail
Alliance Variant
Chr11:94836270 Col1a1 Intron
Tssr104244 508 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27060347
MGI SNP Detail
Alliance Variant
Chr11:94836274 Col1a1 Intron
Tssr104244 512 bp downstream
SNP A/G A A A G A A G A G G A A G A A G G
rs231761196
MGI SNP Detail
Alliance Variant
Chr11:94836364 Col1a1 Coding-Synonymous
Tssr104244 602 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248944104
MGI SNP Detail
Alliance Variant
Chr11:94836412 Col1a1 Coding-Synonymous
Tssr104244 650 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220232954
MGI SNP Detail
Alliance Variant
Chr11:94836434 Col1a1 Intron
Tssr104244 672 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248482372
MGI SNP Detail
Alliance Variant
Chr11:94836509 Col1a1 Intron
Tssr104244 747 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs265966219
MGI SNP Detail
Alliance Variant
Chr11:94836518 Col1a1 Intron
Tssr104244 756 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249371473
MGI SNP Detail
Alliance Variant
Chr11:94836556 Col1a1 Intron
Tssr104244 794 bp downstream
SNP A/T T A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240394137
MGI SNP Detail
Alliance Variant
Chr11:94836982 Col1a1 Intron
Tssr104244 1220 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27060346
MGI SNP Detail
Alliance Variant
Chr11:94836999 Col1a1 Intron
Tssr104244 1237 bp downstream
SNP A/G G A A G G A G G G G G A A G G A G G
rs225700670
MGI SNP Detail
Alliance Variant
Chr11:94837018 Col1a1 Intron
Tssr104244 1256 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G T G G G G
rs244260495
MGI SNP Detail
Alliance Variant
Chr11:94837242 Col1a1 Intron
Tssr104244 1480 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T A T T T T
rs261231546
MGI SNP Detail
Alliance Variant
Chr11:94837493 Col1a1 Intron
Tssr104244 1731 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234614643
MGI SNP Detail
Alliance Variant
Chr11:94837510 Col1a1 Intron
Tssr104244 1748 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253660571
MGI SNP Detail
Alliance Variant
Chr11:94837516 Col1a1 Intron
Tssr104244 1754 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216879701
MGI SNP Detail
Alliance Variant
Chr11:94837526 Col1a1 Intron
Tssr104244 1764 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232697955
MGI SNP Detail
Alliance Variant
Chr11:94837537 Col1a1 Intron
Tssr104244 1775 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs29458689
MGI SNP Detail
Alliance Variant
Chr11:94837646 Col1a1 Coding-Synonymous
Tssr104244 1884 bp downstream
SNP C/T C T C T C
rs27060345
MGI SNP Detail
Alliance Variant
Chr11:94837745 Col1a1 Intron
Tssr104244 1983 bp downstream
SNP C/T C C C C C C T C C C C C C C C
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Showing SNP(s) 1 - 61 of 61

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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory