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Mouse SNP Summary
Symbol
Name
ID 		Tssr104297
transcription start site region 104297
MGI:6032064

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254305553
MGI SNP Detail		 Chr11:94840920 Col1a1 within coordinates of
Tssr104262 within coordinates of
Tssr104297 1961 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27060333
MGI SNP Detail		 Chr11:94841021 Col1a1 within coordinates of
Tssr104297 1860 bp upstream
 SNP C/T C C C C C C C C C C C C C T C
rs27060332
MGI SNP Detail		 Chr11:94841040 Col1a1 within coordinates of
Tssr104297 1841 bp upstream
 SNP A/C C C C C C C C C C C C C A C
rs252146108
MGI SNP Detail		 Chr11:94841350 Col1a1 within coordinates of
Tssr104271 within coordinates of
Tssr104297 1531 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs108914460
MGI SNP Detail		 Chr11:94841436 Col1a1 within coordinates of
Tssr104297 1445 bp upstream
 SNP A/T T A T
rs27060331
MGI SNP Detail		 Chr11:94841635 Col1a1 within coordinates of
Tssr104273 within coordinates of
Tssr104297 1246 bp upstream
 SNP A/G G G G G G G A G G G G G G G G
rs27060330
MGI SNP Detail		 Chr11:94841668 Col1a1 within coordinates of
Tssr104297 1213 bp upstream
Tssr110222 within coordinates of
 SNP A/G G G G G G G G G G G G G G A G
rs226585895
MGI SNP Detail		 Chr11:94841671 Col1a1 within coordinates of
Tssr104297 1210 bp upstream
Tssr110222 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250060214
MGI SNP Detail		 Chr11:94841689 Col1a1 within coordinates of
Tssr104275 within coordinates of
Tssr104297 1192 bp upstream
Tssr110222 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251908527
MGI SNP Detail		 Chr11:94841729 Col1a1 within coordinates of
Tssr104297 1152 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27060329
MGI SNP Detail		 Chr11:94841775 Col1a1 within coordinates of
Tssr104297 1106 bp upstream
 SNP G/T T T G G T T G T G T T T G G T T G T T
rs27060328
MGI SNP Detail		 Chr11:94842097 Col1a1 within coordinates of
Tssr104297 784 bp upstream
 SNP A/C A C A A A C A A A A A A
rs255102879
MGI SNP Detail		 Chr11:94842176 Col1a1 within coordinates of
Tssr104297 705 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs228913016
MGI SNP Detail		 Chr11:94842194 Col1a1 within coordinates of
Tssr104297 687 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C G G C C C C C C C C C C C C C C C
rs240913164
MGI SNP Detail		 Chr11:94842209 Col1a1 within coordinates of
Tssr104297 672 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264717420
MGI SNP Detail		 Chr11:94842214 Col1a1 within coordinates of
Tssr104297 667 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234148661
MGI SNP Detail		 Chr11:94842276 Col1a1 within coordinates of
Tssr104297 605 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259547104
MGI SNP Detail		 Chr11:94842279 Col1a1 within coordinates of
Tssr104297 602 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs216268128
MGI SNP Detail		 Chr11:94842439 Col1a1 within coordinates of
Tssr104287 within coordinates of
Tssr104297 442 bp upstream
Tssr110228 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs227771925
MGI SNP Detail		 Chr11:94842510 Col1a1 within coordinates of
Tssr104297 371 bp upstream
Tssr110230 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245792049
MGI SNP Detail		 Chr11:94842810 Col1a1 within coordinates of
Tssr104297 71 bp upstream
Tssr3647 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs581805203
MGI SNP Detail		 Chr11:94843082 Col1a1 within coordinates of
Tssr104297 192 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213731707
MGI SNP Detail		 Chr11:94843259 Col1a1 within coordinates of
Tssr104297 369 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237388654
MGI SNP Detail		 Chr11:94843289 Col1a1 within coordinates of
Tssr104297 399 bp downstream
Tssr104308 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27060327
MGI SNP Detail		 Chr11:94843381 Col1a1 within coordinates of
Tssr104297 491 bp downstream
Tssr104310 within coordinates of
 SNP A/T A A A T A A A A A A A A T A A T A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219361328
MGI SNP Detail		 Chr11:94843461 Col1a1 within coordinates of
Tssr104297 571 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs52293230
MGI SNP Detail		 Chr11:94843507 Col1a1 within coordinates of
Tssr104297 617 bp downstream
 SNP G/T T G
rs27060326
MGI SNP Detail		 Chr11:94843562 Col1a1 within coordinates of
Tssr104297 672 bp downstream
 SNP A/G A G G A A G A A A G A A G A A
rs29437096
MGI SNP Detail		 Chr11:94843571 Col1a1 within coordinates of
Tssr104297 681 bp downstream
 SNP C/T T C T C
rs220721471
MGI SNP Detail		 Chr11:94843579 Col1a1 within coordinates of
Tssr104297 689 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232117740
MGI SNP Detail		 Chr11:94843597 Col1a1 within coordinates of
Tssr104297 707 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs249330304
MGI SNP Detail		 Chr11:94843599 Col1a1 within coordinates of
Tssr104297 709 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221094464
MGI SNP Detail		 Chr11:94843901 Tssr104297 1011 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29436244
MGI SNP Detail		 Chr11:94843906 Tssr104297 1016 bp downstream
 SNP G/T G G T G T G
rs29407651
MGI SNP Detail		 Chr11:94843923 Tssr104297 1033 bp downstream
 SNP C/T C C T C T C
rs225963876
MGI SNP Detail		 Chr11:94843928 Tssr104297 1038 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242264180
MGI SNP Detail		 Chr11:94844021 Tssr104297 1131 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G T
rs260232757
MGI SNP Detail		 Chr11:94844136 Tssr104297 1246 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227694096
MGI SNP Detail		 Chr11:94844137 Tssr104297 1247 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs246092130
MGI SNP Detail		 Chr11:94844138 Tssr104297 1248 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265082592
MGI SNP Detail		 Chr11:94844149 D11Lis1 within coordinates of
Tssr104297 1259 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27060325
MGI SNP Detail		 Chr11:94844154 D11Lis1 within coordinates of
Tssr104297 1264 bp downstream
 SNP C/T T T C C T T C C T T T C C T T C T T
rs29429420
MGI SNP Detail		 Chr11:94844175 D11Lis1 within coordinates of
Tssr104297 1285 bp downstream
 SNP C/T T T C T
rs585099967
MGI SNP Detail		 Chr11:94844205 D11Lis1 within coordinates of
Tssr104297 1315 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T
rs27060324
MGI SNP Detail		 Chr11:94844260 D11Lis1 within coordinates of
Tssr104297 1370 bp downstream
 SNP A/G G G A A G G A G G G G G A A G G A G G
rs219456806
MGI SNP Detail		 Chr11:94844344 Tssr104297 1454 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29448516
MGI SNP Detail		 Chr11:94844466 Tssr104297 1576 bp downstream
 SNP A/G A G A A
rs29424898
MGI SNP Detail		 Chr11:94844485 Tssr104297 1595 bp downstream
 SNP A/G A G A A
rs29468777
MGI SNP Detail		 Chr11:94844487 Tssr104297 1597 bp downstream
 SNP A/T T A T T
rs27060323
MGI SNP Detail		 Chr11:94844608 Tssr104297 1718 bp downstream
 SNP A/G G G A A G G A G G G G A A G G A G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249685321
MGI SNP Detail		 Chr11:94844652 Tssr104297 1762 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221098506
MGI SNP Detail		 Chr11:94844701 Tssr104297 1811 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C A
rs29445284
MGI SNP Detail		 Chr11:94844829 Tssr104297 1939 bp downstream
 SNP C/T T C T C T
rs264060948
MGI SNP Detail		 Chr11:94844874 Tssr104297 1984 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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