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Mouse SNP Summary
Symbol
Name
ID 		Tssr104479
transcription start site region 104479
MGI:6032246

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Showing SNP(s) 1 - 64 of 64

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263841549
MGI SNP Detail		 Chr11:96181323 Tssr104479 1956 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs52226666
MGI SNP Detail		 Chr11:96181451 Tssr104479 1828 bp upstream
 SNP C/G C G
rs224537181
MGI SNP Detail		 Chr11:96181588 Tssr104479 1691 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244399650
MGI SNP Detail		 Chr11:96181657 Rr386515 within coordinates of
Tssr104479 1622 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs50128993
MGI SNP Detail		 Chr11:96181712 Rr386515 within coordinates of
Tssr104479 1567 bp upstream
 SNP C/G C G
rs48888883
MGI SNP Detail		 Chr11:96181798 Rr386515 within coordinates of
Tssr104479 1481 bp upstream
 SNP C/T C C C T T C C C C T C C C C C C C C C C T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs243710955
MGI SNP Detail		 Chr11:96181862 Rr386515 within coordinates of
Tssr104479 1417 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs578982176
MGI SNP Detail		 Chr11:96181912 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1367 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582345678
MGI SNP Detail		 Chr11:96181914 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1365 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs261310936
MGI SNP Detail		 Chr11:96181923 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1356 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs50330001
MGI SNP Detail		 Chr11:96181949 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1330 bp upstream
 SNP A/T A T
rs47024209
MGI SNP Detail		 Chr11:96181960 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1319 bp upstream
 SNP A/G A G
rs215760087
MGI SNP Detail		 Chr11:96181974 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1305 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs238978529
MGI SNP Detail		 Chr11:96181985 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1294 bp upstream
 SNP G/T G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250539577
MGI SNP Detail		 Chr11:96182006 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1273 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29483917
MGI SNP Detail		 Chr11:96182023 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1256 bp upstream
 SNP C/T C T C
rs29432514
MGI SNP Detail		 Chr11:96182032 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1247 bp upstream
 SNP A/C A C A
rs253037062
MGI SNP Detail		 Chr11:96182035 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1244 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs221747130
MGI SNP Detail		 Chr11:96182055 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1224 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29382926
MGI SNP Detail		 Chr11:96182074 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1205 bp upstream
 SNP C/T C T C
rs262719284
MGI SNP Detail		 Chr11:96182075 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1204 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs578658001
MGI SNP Detail		 Chr11:96182135 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1144 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs224525239
MGI SNP Detail		 Chr11:96182255 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 1024 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs49296439
MGI SNP Detail		 Chr11:96182331 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 948 bp upstream
 SNP A/G A G A
rs262500240
MGI SNP Detail		 Chr11:96182357 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 922 bp upstream
 SNP C/T C C C T T C C C C T C C C C C C C C C C T C C C C C C T C C C C C T C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255934351
MGI SNP Detail		 Chr11:96182539 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 740 bp upstream
 SNP C/G C G
rs237366014
MGI SNP Detail		 Chr11:96182566 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 713 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs261436605
MGI SNP Detail		 Chr11:96182614 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 665 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs51888198
MGI SNP Detail		 Chr11:96182685 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 594 bp upstream
 SNP A/G A G A G
rs253195118
MGI SNP Detail		 Chr11:96182873 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 406 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs265525419
MGI SNP Detail		 Chr11:96182945 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 334 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230841077
MGI SNP Detail		 Chr11:96182988 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 291 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs255258935
MGI SNP Detail		 Chr11:96183130 Hoxb5os within coordinates of
Rr386515 within coordinates of
Tssr104479 149 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs212689855
MGI SNP Detail		 Chr11:96183698 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 364 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29483506
MGI SNP Detail		 Chr11:96183779 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 445 bp downstream
 SNP A/T A T A A
rs216420113
MGI SNP Detail		 Chr11:96183881 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 547 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29414289
MGI SNP Detail		 Chr11:96183902 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 568 bp downstream
 SNP A/G A G A A
rs29438397
MGI SNP Detail		 Chr11:96183936 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 602 bp downstream
 SNP A/C A C A A
rs214783239
MGI SNP Detail		 Chr11:96183965 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 631 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs237379428
MGI SNP Detail		 Chr11:96183988 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 654 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29426877
MGI SNP Detail		 Chr11:96184023 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 689 bp downstream
 SNP C/G G C G G
rs29391212
MGI SNP Detail		 Chr11:96184026 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 692 bp downstream
 SNP A/C C A C C
rs237582833
MGI SNP Detail		 Chr11:96184034 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 700 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255524385
MGI SNP Detail		 Chr11:96184101 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 767 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222809735
MGI SNP Detail		 Chr11:96184173 Cpgi3639 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 839 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249347624
MGI SNP Detail		 Chr11:96184373 Cpgi3639 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1039 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs263201864
MGI SNP Detail		 Chr11:96184520 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1186 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231307272
MGI SNP Detail		 Chr11:96184634 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1300 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs243102802
MGI SNP Detail		 Chr11:96184651 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1317 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs29402180
MGI SNP Detail		 Chr11:96184671 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1337 bp downstream
 SNP A/C A C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29426085
MGI SNP Detail		 Chr11:96184673 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1339 bp downstream
 SNP A/T A T
rs29436192
MGI SNP Detail		 Chr11:96184717 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1383 bp downstream
 SNP A/T T A
rs216573822
MGI SNP Detail		 Chr11:96184767 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1433 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs227333614
MGI SNP Detail		 Chr11:96184787 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1453 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257009176
MGI SNP Detail		 Chr11:96184843 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1509 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214369399
MGI SNP Detail		 Chr11:96184845 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1511 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237703861
MGI SNP Detail		 Chr11:96184851 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1517 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29388287
MGI SNP Detail		 Chr11:96184875 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1541 bp downstream
 SNP C/T T C T
rs213208089
MGI SNP Detail		 Chr11:96184893 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1559 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585494859
MGI SNP Detail		 Chr11:96184936 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1602 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs230222204
MGI SNP Detail		 Chr11:96185099 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1765 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255488171
MGI SNP Detail		 Chr11:96185138 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1804 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T A T T
rs222983417
MGI SNP Detail		 Chr11:96185196 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1862 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246611679
MGI SNP Detail		 Chr11:96185223 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104479 1889 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 64 of 64
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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