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Mouse SNP Summary
Symbol
Name
ID 		Tssr104482
transcription start site region 104482
MGI:6032249

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Showing SNP(s) 1 - 48 of 48

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228974350
MGI SNP Detail		 Chr11:96187827 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1804 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs249175493
MGI SNP Detail		 Chr11:96187861 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1770 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs218517528
MGI SNP Detail		 Chr11:96187986 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1645 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29450146
MGI SNP Detail		 Chr11:96188341 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1290 bp upstream
 SNP A/C A C A
rs29413703
MGI SNP Detail		 Chr11:96188379 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1252 bp upstream
 SNP C/T T C T T
rs27045543
MGI SNP Detail		 Chr11:96188419 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1212 bp upstream
 SNP C/T C C C C C C T
rs231552479
MGI SNP Detail		 Chr11:96188452 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1179 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249100380
MGI SNP Detail		 Chr11:96188501 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1130 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs218019937
MGI SNP Detail		 Chr11:96188535 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1096 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29391023
MGI SNP Detail		 Chr11:96188597 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1034 bp upstream
 SNP A/G A G A A
rs252682254
MGI SNP Detail		 Chr11:96188622 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1009 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225115660
MGI SNP Detail		 Chr11:96188643 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 988 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245221613
MGI SNP Detail		 Chr11:96188694 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 937 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265244034
MGI SNP Detail		 Chr11:96188713 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 918 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579511643
MGI SNP Detail		 Chr11:96188754 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 877 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222475838
MGI SNP Detail		 Chr11:96188928 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 703 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29398807
MGI SNP Detail		 Chr11:96189064 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 567 bp upstream
 SNP C/T T C T T
rs29384481
MGI SNP Detail		 Chr11:96189067 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 564 bp upstream
 SNP A/T T A T T
rs229031495
MGI SNP Detail		 Chr11:96189151 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 480 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247667155
MGI SNP Detail		 Chr11:96189155 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 476 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs263416567
MGI SNP Detail		 Chr11:96189185 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 446 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233529544
MGI SNP Detail		 Chr11:96189218 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 413 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs252729407
MGI SNP Detail		 Chr11:96189273 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 358 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215475750
MGI SNP Detail		 Chr11:96189393 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 238 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225642178
MGI SNP Detail		 Chr11:96189406 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 225 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243231916
MGI SNP Detail		 Chr11:96189607 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 24 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs46615200
MGI SNP Detail		 Chr11:96189984 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 337 bp downstream
 SNP G/T T G
rs235356477
MGI SNP Detail		 Chr11:96190323 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 676 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263769732
MGI SNP Detail		 Chr11:96190356 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 709 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216807502
MGI SNP Detail		 Chr11:96190374 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 727 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29463002
MGI SNP Detail		 Chr11:96190432 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 785 bp downstream
 SNP C/T C C T C
rs257870467
MGI SNP Detail		 Chr11:96190442 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 795 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48152565
MGI SNP Detail		 Chr11:96190446 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 799 bp downstream
 SNP C/G C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs237896468
MGI SNP Detail		 Chr11:96190461 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 814 bp downstream
 SNP G/T T T T T T T G T T G T T T T T T T T T T G T T T T T T T T T G T T G G T T
rs249496058
MGI SNP Detail		 Chr11:96190463 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 816 bp downstream
 SNP G/T T T T G T G T G T T T T T G T G G T G T T T G G G T G G T G
rs580230597
MGI SNP Detail		 Chr11:96190475 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 828 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs223233745
MGI SNP Detail		 Chr11:96190570 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 923 bp downstream
 SNP A/C C C C A A C C C C A C C C C C C C C C C A C C C C C C A C C C C C A C C C C C C C C C C C C C C C C C C C
rs27045542
MGI SNP Detail		 Chr11:96190604 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 957 bp downstream
 SNP C/T C C C C C C C C C C C T C
rs265623690
MGI SNP Detail		 Chr11:96190654 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1007 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231391786
MGI SNP Detail		 Chr11:96190845 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1198 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs248391229
MGI SNP Detail		 Chr11:96190852 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1205 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs262985139
MGI SNP Detail		 Chr11:96190861 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1214 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225705831
MGI SNP Detail		 Chr11:96190956 Cpgi3641 within coordinates of
Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1309 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs243292521
MGI SNP Detail		 Chr11:96190981 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1334 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212376631
MGI SNP Detail		 Chr11:96191008 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1361 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46600205
MGI SNP Detail		 Chr11:96191022 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1375 bp downstream
 SNP A/G G A
rs254118714
MGI SNP Detail		 Chr11:96191246 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1599 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217235636
MGI SNP Detail		 Chr11:96191278 Hoxb5os within coordinates of
Hoxb6 within coordinates of
Tssr104482 1631 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 48 of 48
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory