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Mouse SNP Summary
Symbol
Name
ID 		Tssr104504
transcription start site region 104504
MGI:6032271

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Showing SNP(s) 1 - 41 of 41

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29436421
MGI SNP Detail		 Chr11:96196178 Hoxb5 within coordinates of
Hoxb5os within coordinates of
Tssr104504 1765 bp upstream
 SNP A/T T T A T T
rs218402857
MGI SNP Detail		 Chr11:96196338 Hoxb5 within coordinates of
Hoxb5os within coordinates of
Tssr104504 1605 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29480669
MGI SNP Detail		 Chr11:96196415 Hoxb5 within coordinates of
Hoxb5os within coordinates of
Tssr104504 1528 bp upstream
 SNP C/T C C T C C
rs254271674
MGI SNP Detail		 Chr11:96196516 Hoxb5 within coordinates of
Hoxb5os within coordinates of
Tssr104504 1427 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs4229034
MGI SNP Detail		 Chr11:96196811 Hoxb5 within coordinates of
Hoxb5os within coordinates of
Tssr104504 1132 bp upstream
 SNP G/T G G G G G G G T
rs4229033
MGI SNP Detail		 Chr11:96197060 Hoxb5os within coordinates of
Tssr104504 883 bp upstream
 SNP C/G G G G G G G G C
rs4229032
MGI SNP Detail		 Chr11:96197065 Hoxb5os within coordinates of
Tssr104504 878 bp upstream
 SNP C/T T T T T T C T T
rs4229031
MGI SNP Detail		 Chr11:96197100 Hoxb5os within coordinates of
Tssr104504 843 bp upstream
 SNP A/G A A A A A A A G
rs4229030
MGI SNP Detail		 Chr11:96197112 Hoxb5os within coordinates of
Tssr104504 831 bp upstream
 SNP A/G A A A A A G A A
rs4229029
MGI SNP Detail		 Chr11:96197167 Hoxb5os within coordinates of
Tssr104504 776 bp upstream
 SNP A/G G G G G G G G A
rs225084371
MGI SNP Detail		 Chr11:96197298 Hoxb5os within coordinates of
Tssr104504 645 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243500004
MGI SNP Detail		 Chr11:96197301 Hoxb5os within coordinates of
Tssr104504 642 bp upstream
 SNP C/G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T G
rs217344874
MGI SNP Detail		 Chr11:96197312 Hoxb5os within coordinates of
Tssr104504 631 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242065621
MGI SNP Detail		 Chr11:96197328 Hoxb5os within coordinates of
Tssr104504 615 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253001017
MGI SNP Detail		 Chr11:96197331 Hoxb5os within coordinates of
Tssr104504 612 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216045744
MGI SNP Detail		 Chr11:96197461 Hoxb5os within coordinates of
Tssr104504 482 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236743824
MGI SNP Detail		 Chr11:96197615 Hoxb5os within coordinates of
Tssr104504 328 bp upstream
 SNP A/G A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs249505479
MGI SNP Detail		 Chr11:96197677 Hoxb5os within coordinates of
Tssr104504 266 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs218370630
MGI SNP Detail		 Chr11:96198348 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 394 bp downstream
 SNP G/T G G G T T G G G G T G G G G G G G G G G T G T G G G G T G G G G T G G G G G G T G G G G G G G G G G G G
rs229691282
MGI SNP Detail		 Chr11:96198434 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 480 bp downstream
 SNP C/G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs252954962
MGI SNP Detail		 Chr11:96198435 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 481 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29386446
MGI SNP Detail		 Chr11:96198452 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 498 bp downstream
 SNP C/T C T
rs250680777
MGI SNP Detail		 Chr11:96198542 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 588 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263760699
MGI SNP Detail		 Chr11:96198571 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 617 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224587897
MGI SNP Detail		 Chr11:96198756 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 802 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239883866
MGI SNP Detail		 Chr11:96198952 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 998 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257759301
MGI SNP Detail		 Chr11:96199072 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1118 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225146693
MGI SNP Detail		 Chr11:96199108 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1154 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27045536
MGI SNP Detail		 Chr11:96199125 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1171 bp downstream
 SNP A/G G A A G G G G G G A G G
rs261338421
MGI SNP Detail		 Chr11:96199218 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1264 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233068241
MGI SNP Detail		 Chr11:96199242 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1288 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258254042
MGI SNP Detail		 Chr11:96199251 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1297 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215507992
MGI SNP Detail		 Chr11:96199308 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1354 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29455870
MGI SNP Detail		 Chr11:96199346 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1392 bp downstream
 SNP C/T T T C T T
rs243609523
MGI SNP Detail		 Chr11:96199515 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1561 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212616334
MGI SNP Detail		 Chr11:96199588 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1634 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs584879652
MGI SNP Detail		 Chr11:96199606 Gm74526 within coordinates of
Rr455367 within coordinates of
Tssr104504 1652 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229766485
MGI SNP Detail		 Chr11:96199691 Gm74526 within coordinates of
Rr455368 within coordinates of
Tssr104504 1737 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs587452288
MGI SNP Detail		 Chr11:96199709 Gm74526 within coordinates of
Rr455368 within coordinates of
Tssr104504 1755 bp downstream
Tssr110328 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252932219
MGI SNP Detail		 Chr11:96199774 Gm74526 within coordinates of
Rr455368 within coordinates of
Tssr104504 1820 bp downstream
 SNP C/T C C C T T C C C C T C C C C C C C C C C T C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs217749125
MGI SNP Detail		 Chr11:96199840 Gm74526 within coordinates of
Rr455368 within coordinates of
Tssr104504 1886 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 41 of 41
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory