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Mouse SNP Summary
Symbol
Name
ID 		Tssr104520
transcription start site region 104520
MGI:6032287

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Showing SNP(s) 1 - 66 of 66

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241992412
MGI SNP Detail		 Chr11:96240936 Hoxb3os within coordinates of
Rr454 within coordinates of
Tssr104520 1759 bp upstream
Tssr110331 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217129853
MGI SNP Detail		 Chr11:96241073 Hoxb3os within coordinates of
Tssr104520 1622 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs587284349
MGI SNP Detail		 Chr11:96241313 Hoxb3os within coordinates of
Tssr104520 1382 bp upstream
 SNP G/T T T T G G T T T T G T T T T T T T T T G G T G T T T T G T T T T T T T T T G T T T T T T G T T G T
rs579974860
MGI SNP Detail		 Chr11:96241320 Hoxb3os within coordinates of
Tssr104520 1375 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs52471342
MGI SNP Detail		 Chr11:96241329 Hoxb3os within coordinates of
Tssr104520 1366 bp upstream
 SNP G/T T G T
rs108022194
MGI SNP Detail		 Chr11:96241336 Hoxb3os within coordinates of
Tssr104520 1359 bp upstream
 SNP G/T T G T
rs108439826
MGI SNP Detail		 Chr11:96241345 Hoxb3os within coordinates of
Tssr104520 1350 bp upstream
 SNP G/T T G T
rs583392506
MGI SNP Detail		 Chr11:96241354 Hoxb3os within coordinates of
Tssr104520 1341 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T
rs235506078
MGI SNP Detail		 Chr11:96241401 Hoxb3os within coordinates of
Tssr104520 1294 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs49483517
MGI SNP Detail		 Chr11:96241495 Hoxb3os within coordinates of
Tssr104520 1200 bp upstream
 SNP C/T C T C
rs47074452
MGI SNP Detail		 Chr11:96241497 Hoxb3os within coordinates of
Tssr104520 1198 bp upstream
 SNP C/T C T C
rs240276845
MGI SNP Detail		 Chr11:96241524 Hoxb3os within coordinates of
Tssr104520 1171 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs258149375
MGI SNP Detail		 Chr11:96241546 Hoxb3os within coordinates of
Tssr104520 1149 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs222303146
MGI SNP Detail		 Chr11:96241595 Hoxb3os within coordinates of
Tssr104520 1100 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242431812
MGI SNP Detail		 Chr11:96241600 Hoxb3os within coordinates of
Tssr104520 1095 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs256093127
MGI SNP Detail		 Chr11:96241602 Hoxb3os within coordinates of
Tssr104520 1093 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223560310
MGI SNP Detail		 Chr11:96241605 Hoxb3os within coordinates of
Tssr104520 1090 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242072667
MGI SNP Detail		 Chr11:96241782 Hoxb3os within coordinates of
Tssr104520 913 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259855928
MGI SNP Detail		 Chr11:96241836 Hoxb3os within coordinates of
Tssr104520 859 bp upstream
 SNP A/T A A A T T A A A A T A A A A A A A A A T T A T A A A A T T A A A T A A A A A A T A A A A A A A T A A T A
rs27045531
MGI SNP Detail		 Chr11:96241865 Hoxb3os within coordinates of
Tssr104520 830 bp upstream
 SNP C/T T C C T T C C T T C
rs256101548
MGI SNP Detail		 Chr11:96241880 Hoxb3os within coordinates of
Tssr104520 815 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262324120
MGI SNP Detail		 Chr11:96241885 Hoxb3os within coordinates of
Tssr104520 810 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228955233
MGI SNP Detail		 Chr11:96241949 Hoxb3os within coordinates of
Tssr104520 746 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242146005
MGI SNP Detail		 Chr11:96241953 Hoxb3os within coordinates of
Tssr104520 742 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G A G
rs29462757
MGI SNP Detail		 Chr11:96242040 Hoxb3os within coordinates of
Tssr104520 655 bp upstream
 SNP C/T C T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29395652
MGI SNP Detail		 Chr11:96242048 Hoxb3os within coordinates of
Tssr104520 647 bp upstream
 SNP A/C C A A
rs233956637
MGI SNP Detail		 Chr11:96242281 Hoxb3os within coordinates of
Tssr104520 414 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245698969
MGI SNP Detail		 Chr11:96242451 Hoxb3os within coordinates of
Tssr104519 within coordinates of
Tssr104520 244 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs217573624
MGI SNP Detail		 Chr11:96242499 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 196 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs238281635
MGI SNP Detail		 Chr11:96242517 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 178 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27045530
MGI SNP Detail		 Chr11:96242535 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 160 bp upstream
 SNP C/T T C C T T C C T T C
rs222873310
MGI SNP Detail		 Chr11:96242613 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 82 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs230853623
MGI SNP Detail		 Chr11:96242714 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 14 bp downstream
 SNP C/T C C C T T C C C C T C C C C C C C C C C T C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C C
rs249741558
MGI SNP Detail		 Chr11:96242882 Cpgi3656 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 182 bp downstream
Tssr104524 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs223632511
MGI SNP Detail		 Chr11:96242894 Cpgi3656 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 194 bp downstream
Tssr104524 within coordinates of
 SNP C/T T T T C C T T T T C T T T T T T T T T C C T C T T T T C C T T T C T T T T T T C T T T T T T T C T T C T
rs242042614
MGI SNP Detail		 Chr11:96242909 Cpgi3656 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 209 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27045529
MGI SNP Detail		 Chr11:96243011 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 311 bp downstream
 SNP A/G A A A A G A A A
rs224145829
MGI SNP Detail		 Chr11:96243012 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 312 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs244141294
MGI SNP Detail		 Chr11:96243075 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 375 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265037323
MGI SNP Detail		 Chr11:96243140 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 440 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47358244
MGI SNP Detail		 Chr11:96243165 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 465 bp downstream
 SNP C/T C T
rs235763840
MGI SNP Detail		 Chr11:96243176 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 476 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T A T T T T T T T T T T T T T T T T T T A T T A T
rs259597937
MGI SNP Detail		 Chr11:96243246 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 546 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228145890
MGI SNP Detail		 Chr11:96243247 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 547 bp downstream
 SNP A/T A A A T A A A A T A A A A A A A A A A T A A A A A A A A A A T A A A A A A T A A A A A A A A A A A A
rs27045528
MGI SNP Detail		 Chr11:96243337 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 637 bp downstream
 SNP C/T T T T T C T T T T
rs215339413
MGI SNP Detail		 Chr11:96243413 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 713 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232570721
MGI SNP Detail		 Chr11:96243426 Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 726 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251913235
MGI SNP Detail		 Chr11:96243780 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1080 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214644962
MGI SNP Detail		 Chr11:96243795 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1095 bp downstream
 SNP A/G A A A G G A A A A G A A A A A A A A A G G A G A A A A G G A A A A G A A A A A A G A A A A A A A G A A A A
rs230944023
MGI SNP Detail		 Chr11:96243796 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1096 bp downstream
 SNP A/T T T T A A T T T T A T T T T T T T T T A A T A T T T T A A T T T T A T T T T T T A T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27045527
MGI SNP Detail		 Chr11:96243798 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1098 bp downstream
 SNP C/T C T C C C T T C C C
rs249914727
MGI SNP Detail		 Chr11:96243918 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1218 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217566379
MGI SNP Detail		 Chr11:96244025 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1325 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27045526
MGI SNP Detail		 Chr11:96244049 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1349 bp downstream
 SNP A/G G A G G G A G G A
rs27045525
MGI SNP Detail		 Chr11:96244081 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1381 bp downstream
 SNP A/G G G G G A G G G
rs263391379
MGI SNP Detail		 Chr11:96244108 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1408 bp downstream
 SNP A/G G G G A A G G G G A G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs224327229
MGI SNP Detail		 Chr11:96244175 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Hoxb3os within coordinates of
Tssr104520 1475 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs246960450
MGI SNP Detail		 Chr11:96244238 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Tssr104520 1538 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs257016754
MGI SNP Detail		 Chr11:96244342 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Tssr104520 1642 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs27045524
MGI SNP Detail		 Chr11:96244353 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Tssr104520 1653 bp downstream
 SNP A/G A G A A A G A A G
rs27045523
MGI SNP Detail		 Chr11:96244384 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Tssr104520 1684 bp downstream
 SNP A/G G A G G G A G G A
rs259770111
MGI SNP Detail		 Chr11:96244480 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Tssr104520 1780 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs228091300
MGI SNP Detail		 Chr11:96244504 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Tssr104520 1804 bp downstream
 SNP A/G G G G A A G G G G A G G G G G G G G G G A G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs246152995
MGI SNP Detail		 Chr11:96244509 Cpgi3657 within coordinates of
Hoxb2 within coordinates of
Tssr104520 1809 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G T T G G G G G G G G G G G G G G G G G G G G G T G
rs265416868
MGI SNP Detail		 Chr11:96244566 Hoxb2 within coordinates of
Tssr104520 1866 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs230570023
MGI SNP Detail		 Chr11:96244673 Hoxb2 within coordinates of
Tssr104520 1973 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
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Showing SNP(s) 1 - 66 of 66
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory