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Mouse SNP Summary
Symbol
Name
ID 		Tssr104973
transcription start site region 104973
MGI:6032740

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27058140
MGI SNP Detail		 Chr11:100749117 Gm72578 within coordinates of
Tssr104973 1887 bp upstream
 SNP C/T C C T C C C C C C C C C C C C T
rs263419322
MGI SNP Detail		 Chr11:100749218 Gm72578 within coordinates of
Tssr104973 1786 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs229759187
MGI SNP Detail		 Chr11:100749224 Gm72578 within coordinates of
Tssr104973 1780 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244630456
MGI SNP Detail		 Chr11:100749228 Gm72578 within coordinates of
Tssr104973 1776 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs256335665
MGI SNP Detail		 Chr11:100749243 Gm72578 within coordinates of
Tssr104973 1761 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225278273
MGI SNP Detail		 Chr11:100749321 Gm72578 within coordinates of
Tssr104973 1683 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27058139
MGI SNP Detail		 Chr11:100749463 Gm72578 within coordinates of
Tssr104973 1541 bp upstream
 SNP A/G A G A A A A G A A A G A A
rs27058138
MGI SNP Detail		 Chr11:100749488 Gm72578 within coordinates of
Tssr104973 1516 bp upstream
 SNP C/T C C C C C C C C C C T C C T C
rs27058137
MGI SNP Detail		 Chr11:100749556 Gm72578 within coordinates of
Tssr104973 1448 bp upstream
 SNP A/G G G G G G G A G G G G G G G G
rs258436074
MGI SNP Detail		 Chr11:100749569 Gm72578 within coordinates of
Tssr104973 1435 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs27058136
MGI SNP Detail		 Chr11:100749632 Gm72578 within coordinates of
Tssr104973 1372 bp upstream
 SNP A/G G G A G G G G A G G G A G G A A
rs27058135
MGI SNP Detail		 Chr11:100749701 Gm72578 within coordinates of
Tssr104973 1303 bp upstream
 SNP C/T C C C C C C C C C C C C C T C
rs239021383
MGI SNP Detail		 Chr11:100749736 Gm72578 within coordinates of
Tssr104973 1268 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250504918
MGI SNP Detail		 Chr11:100749788 Gm72578 within coordinates of
Tssr104973 1216 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs212034019
MGI SNP Detail		 Chr11:100749820 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1184 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230629195
MGI SNP Detail		 Chr11:100749821 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1183 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252524751
MGI SNP Detail		 Chr11:100749835 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1169 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579015268
MGI SNP Detail		 Chr11:100749836 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1168 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs46860840
MGI SNP Detail		 Chr11:100749839 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1165 bp upstream
 SNP A/C A C A
rs244933054
MGI SNP Detail		 Chr11:100749853 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1151 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T
rs263197476
MGI SNP Detail		 Chr11:100749915 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1089 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222272535
MGI SNP Detail		 Chr11:100749979 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1025 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G A G G G G G G G G G G G
rs246495850
MGI SNP Detail		 Chr11:100749996 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 1008 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs256412853
MGI SNP Detail		 Chr11:100750006 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 998 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs47272317
MGI SNP Detail		 Chr11:100750149 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 855 bp upstream
 SNP C/T T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242289024
MGI SNP Detail		 Chr11:100750150 Gm72578 within coordinates of
Rr456792 within coordinates of
Tssr104973 854 bp upstream
 SNP A/G/T A A A A A A A A A A A A A A A A A A A G A A T A A A A T A A A A A T A A A A A A T A A A A A A A G A A A A
rs27058134
MGI SNP Detail		 Chr11:100750382 Gm72578 within coordinates of
Rr456792 within coordinates of
Stat5a within coordinates of
Tssr104973 622 bp upstream
 SNP A/G A A A A A A A A A A G A A A
rs582737761
MGI SNP Detail		 Chr11:100750393 Gm72578 within coordinates of
Rr456792 within coordinates of
Stat5a within coordinates of
Tssr104973 611 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs27058133
MGI SNP Detail		 Chr11:100750412 Gm72578 within coordinates of
Rr456792 within coordinates of
Stat5a within coordinates of
Tssr104973 592 bp upstream
 SNP A/G A A A A A A G A A A A A A A
rs232410118
MGI SNP Detail		 Chr11:100750431 Gm72578 within coordinates of
Rr456792 within coordinates of
Stat5a within coordinates of
Tssr104973 573 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs253336685
MGI SNP Detail		 Chr11:100750528 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 476 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214405932
MGI SNP Detail		 Chr11:100750574 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 430 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs231015931
MGI SNP Detail		 Chr11:100750623 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 381 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs242374885
MGI SNP Detail		 Chr11:100750672 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 332 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212074484
MGI SNP Detail		 Chr11:100750680 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 324 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27058132
MGI SNP Detail		 Chr11:100750722 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 282 bp upstream
 SNP A/G G G G G G G A G G G G G G G G
rs252594366
MGI SNP Detail		 Chr11:100750764 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 240 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs219016171
MGI SNP Detail		 Chr11:100750790 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 214 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs239758519
MGI SNP Detail		 Chr11:100750815 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 189 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs259264416
MGI SNP Detail		 Chr11:100750816 Gm72578 within coordinates of
Stat5a within coordinates of
Tssr104973 188 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs586052578
MGI SNP Detail		 Chr11:100750841 Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104973 163 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27058131
MGI SNP Detail		 Chr11:100750939 Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104972 within coordinates of
Tssr104973 65 bp upstream
 SNP C/T C C C C C C T C C C C C C C C
rs243776147
MGI SNP Detail		 Chr11:100750978 Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104973 26 bp upstream
 SNP C/T T T C T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T C C
rs27058130
MGI SNP Detail		 Chr11:100750985 Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104973 19 bp upstream
 SNP C/G G G G G C
rs249260986
MGI SNP Detail		 Chr11:100751049 Cpgi3835 within coordinates of
Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104973 38 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218551747
MGI SNP Detail		 Chr11:100751061 Cpgi3835 within coordinates of
Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104973 50 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs242376682
MGI SNP Detail		 Chr11:100751080 Cpgi3835 within coordinates of
Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104973 69 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27058129
MGI SNP Detail		 Chr11:100751247 Cpgi3835 within coordinates of
Gm72578 within coordinates of
Rr456793 within coordinates of
Stat5a within coordinates of
Tssr104973 236 bp downstream
Tssr104978 within coordinates of
 SNP A/T T T T T T T A T T T A T T A
rs224514092
MGI SNP Detail		 Chr11:100751364 Cpgi3835 within coordinates of
Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 353 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249466571
MGI SNP Detail		 Chr11:100751444 Cpgi3835 within coordinates of
Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 433 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262481182
MGI SNP Detail		 Chr11:100751552 Cpgi3835 within coordinates of
Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 541 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs231358227
MGI SNP Detail		 Chr11:100751662 Cpgi3835 within coordinates of
Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 651 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27058128
MGI SNP Detail		 Chr11:100751663 Cpgi3835 within coordinates of
Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 652 bp downstream
 SNP C/T C C C C T C C C C C C C C
rs254705506
MGI SNP Detail		 Chr11:100751670 Cpgi3835 within coordinates of
Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 659 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs228469568
MGI SNP Detail		 Chr11:100751682 Cpgi3835 within coordinates of
Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 671 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27058127
MGI SNP Detail		 Chr11:100751752 Rr456795 within coordinates of
Stat5a within coordinates of
Tssr104973 741 bp downstream
 SNP A/G G G G G G G G G G A G G A G
rs219053072
MGI SNP Detail		 Chr11:100751848 Stat5a within coordinates of
Tssr104973 837 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237792373
MGI SNP Detail		 Chr11:100751956 Stat5a within coordinates of
Tssr104973 945 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27058126
MGI SNP Detail		 Chr11:100751973 Stat5a within coordinates of
Tssr104973 962 bp downstream
 SNP A/G G G G G G G G G G G G G G A G
rs213515219
MGI SNP Detail		 Chr11:100752095 Stat5a within coordinates of
Tssr104973 1084 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs232534860
MGI SNP Detail		 Chr11:100752254 Stat5a within coordinates of
Tssr104973 1243 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27058125
MGI SNP Detail		 Chr11:100752304 Stat5a within coordinates of
Tssr104973 1293 bp downstream
 SNP C/T T T T T T T C T T T C T T C
rs218583902
MGI SNP Detail		 Chr11:100752483 Stat5a within coordinates of
Tssr104973 1472 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs235261502
MGI SNP Detail		 Chr11:100752530 Stat5a within coordinates of
Tssr104973 1519 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs27058124
MGI SNP Detail		 Chr11:100752595 Stat5a within coordinates of
Tssr104973 1584 bp downstream
 SNP A/G A A A G A A G
rs224645694
MGI SNP Detail		 Chr11:100752789 Stat5a within coordinates of
Tssr104973 1778 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246773376
MGI SNP Detail		 Chr11:100752886 Stat5a within coordinates of
Tssr104973 1875 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265150611
MGI SNP Detail		 Chr11:100752893 Stat5a within coordinates of
Tssr104973 1882 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs223728585
MGI SNP Detail		 Chr11:100752910 Stat5a within coordinates of
Tssr104973 1899 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236048947
MGI SNP Detail		 Chr11:100752982 Stat5a within coordinates of
Tssr104973 1971 bp downstream
Tssr104981 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs254734907
MGI SNP Detail		 Chr11:100752985 Stat5a within coordinates of
Tssr104973 1974 bp downstream
Tssr104981 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 71 of 71
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory