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Mouse SNP Summary
Symbol
Name
ID 		Tssr106343
transcription start site region 106343
MGI:6034110

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Showing SNP(s) 1 - 58 of 58

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256966327
MGI SNP Detail		 Chr11:120602827 Cenpx within coordinates of
Tssr106343 1977 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225884854
MGI SNP Detail		 Chr11:120602916 Cenpx within coordinates of
Tssr106343 1888 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C C C T T T C C T T T T
rs243665443
MGI SNP Detail		 Chr11:120602925 Cenpx within coordinates of
Tssr106343 1879 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C C C A A A C A A A A A
rs264833107
MGI SNP Detail		 Chr11:120602987 Cenpx within coordinates of
Tssr106343 1817 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C C C T T T C C T T T T
rs227580323
MGI SNP Detail		 Chr11:120603010 Cenpx within coordinates of
Tssr106343 1794 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260129782
MGI SNP Detail		 Chr11:120603034 Cenpx within coordinates of
Tssr106343 1770 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C A C C C C C C A A A C C C A C C C C C
rs218033673
MGI SNP Detail		 Chr11:120603045 Cenpx within coordinates of
Tssr106343 1759 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234845249
MGI SNP Detail		 Chr11:120603051 Cenpx within coordinates of
Tssr106343 1753 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583634855
MGI SNP Detail		 Chr11:120603055 Cenpx within coordinates of
Tssr106343 1749 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246615043
MGI SNP Detail		 Chr11:120603102 Cenpx within coordinates of
Tssr106343 1702 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T T T C C C T T C C C C
rs214523987
MGI SNP Detail		 Chr11:120603129 Cenpx within coordinates of
Tssr106343 1675 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T T T C C C T C C C C C
rs231998671
MGI SNP Detail		 Chr11:120603279 Cenpx within coordinates of
Rr232584 within coordinates of
Rr246348 within coordinates of
Tssr106343 1525 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T T T C C C T C C C C C
rs256529985
MGI SNP Detail		 Chr11:120603280 Cenpx within coordinates of
Rr232584 within coordinates of
Rr246348 within coordinates of
Tssr106343 1524 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212560324
MGI SNP Detail		 Chr11:120603348 Cenpx within coordinates of
Rr232584 within coordinates of
Rr246348 within coordinates of
Tssr106343 1456 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240635545
MGI SNP Detail		 Chr11:120603356 Cenpx within coordinates of
Rr232584 within coordinates of
Rr246348 within coordinates of
Tssr106343 1448 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263973028
MGI SNP Detail		 Chr11:120603411 Cenpx within coordinates of
Rr246348 within coordinates of
Tssr106343 1393 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T T T C C C T T C C C C
rs221716530
MGI SNP Detail		 Chr11:120603416 Cenpx within coordinates of
Rr246348 within coordinates of
Tssr106343 1388 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G G G A A A G A A A A A
rs239653530
MGI SNP Detail		 Chr11:120603428 Cenpx within coordinates of
Rr246348 within coordinates of
Tssr106343 1376 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T A T T T T T T A A A T T T A T T T T T
rs250939035
MGI SNP Detail		 Chr11:120603482 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 1322 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T T T C C C T T C C C C
rs587517046
MGI SNP Detail		 Chr11:120603560 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 1244 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T G G G G G G T T T G G G T G G G G G
rs581260677
MGI SNP Detail		 Chr11:120603571 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 1233 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219841047
MGI SNP Detail		 Chr11:120603742 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 1062 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs245727225
MGI SNP Detail		 Chr11:120603747 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 1057 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C C C T T T C C T T T T
rs583868791
MGI SNP Detail		 Chr11:120603815 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 989 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs261844137
MGI SNP Detail		 Chr11:120603818 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 986 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227947522
MGI SNP Detail		 Chr11:120603826 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 978 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248213724
MGI SNP Detail		 Chr11:120603853 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 951 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265904996
MGI SNP Detail		 Chr11:120603888 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 916 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228104771
MGI SNP Detail		 Chr11:120603928 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 876 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246550068
MGI SNP Detail		 Chr11:120603956 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 848 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs214499623
MGI SNP Detail		 Chr11:120604121 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 683 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225873740
MGI SNP Detail		 Chr11:120604152 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 652 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254372232
MGI SNP Detail		 Chr11:120604294 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 510 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212207211
MGI SNP Detail		 Chr11:120604357 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 447 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs243333429
MGI SNP Detail		 Chr11:120604392 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 412 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260521044
MGI SNP Detail		 Chr11:120604423 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 381 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216265640
MGI SNP Detail		 Chr11:120604431 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 373 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233222468
MGI SNP Detail		 Chr11:120604434 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 370 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A A A G G G A G G G G G
rs250912026
MGI SNP Detail		 Chr11:120604437 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Tssr106343 367 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219757928
MGI SNP Detail		 Chr11:120604538 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Rr403203 within coordinates of
Tssr106343 266 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242763098
MGI SNP Detail		 Chr11:120604561 Cenpx within coordinates of
Cpgi4325 within coordinates of
Rr246348 within coordinates of
Rr403203 within coordinates of
Tssr106343 243 bp upstream
Tssr112369 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs261333593
MGI SNP Detail		 Chr11:120604928 Cpgi4325 within coordinates of
Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 103 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220101431
MGI SNP Detail		 Chr11:120605063 Cpgi4325 within coordinates of
Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 238 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T A T T T T T T A A A T T T A A T T T T
rs251097160
MGI SNP Detail		 Chr11:120605091 Cpgi4325 within coordinates of
Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 266 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260567863
MGI SNP Detail		 Chr11:120605147 Cpgi4325 within coordinates of
Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 322 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs228070675
MGI SNP Detail		 Chr11:120605164 Cpgi4325 within coordinates of
Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 339 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240478060
MGI SNP Detail		 Chr11:120605400 Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 575 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs258326447
MGI SNP Detail		 Chr11:120605812 Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 987 bp downstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A A A G G G A T G G G G
rs230254547
MGI SNP Detail		 Chr11:120605860 Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 1035 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249974015
MGI SNP Detail		 Chr11:120605961 Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 1136 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212463148
MGI SNP Detail		 Chr11:120605972 Lrrc45 within coordinates of
Rr246348 within coordinates of
Tssr106343 1147 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C C C G G G C C G G G G
rs234077080
MGI SNP Detail		 Chr11:120606074 Lrrc45 within coordinates of
Tssr106343 1249 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs259472626
MGI SNP Detail		 Chr11:120606075 Lrrc45 within coordinates of
Tssr106343 1250 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216211508
MGI SNP Detail		 Chr11:120606096 Lrrc45 within coordinates of
Tssr106343 1271 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A A A G G G A G G G G G
rs233118313
MGI SNP Detail		 Chr11:120606191 Lrrc45 within coordinates of
Tssr106343 1366 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A A A G G G A G G G G G
rs244862697
MGI SNP Detail		 Chr11:120606227 Lrrc45 within coordinates of
Tssr106343 1402 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C C C C G G G C C C G C C C C C
rs214003699
MGI SNP Detail		 Chr11:120606456 Lrrc45 within coordinates of
Tssr106343 1631 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A A A G G G A A G G G G
rs237585516
MGI SNP Detail		 Chr11:120606733 Lrrc45 within coordinates of
Tssr106343 1908 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 58 of 58
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory