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Mouse SNP Summary
Symbol
Name
ID 		Tssr109845
transcription start site region 109845
MGI:6037612

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Showing SNP(s) 1 - 46 of 46

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223017790
MGI SNP Detail		 Chr11:86247104 Med13 within coordinates of
Tssr109845 1940 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs51716176
MGI SNP Detail		 Chr11:86247106 Med13 within coordinates of
Tssr109845 1938 bp downstream
 SNP A/G A A A A G G G G A G A A G G G G G G A A A G A G G G G A A G G A G A G G G G G G A G G G A G A G A G A A G
rs265545481
MGI SNP Detail		 Chr11:86247107 Med13 within coordinates of
Tssr109845 1937 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs227765228
MGI SNP Detail		 Chr11:86247174 Med13 within coordinates of
Tssr109845 1870 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs246763678
MGI SNP Detail		 Chr11:86247339 Med13 within coordinates of
Tssr109845 1705 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs259945868
MGI SNP Detail		 Chr11:86247368 Med13 within coordinates of
Tssr109845 1676 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223805495
MGI SNP Detail		 Chr11:86247815 Med13 within coordinates of
Tssr109845 1229 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G T G G G G G G G
rs254712964
MGI SNP Detail		 Chr11:86247862 Med13 within coordinates of
Tssr109845 1182 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214112337
MGI SNP Detail		 Chr11:86247873 Med13 within coordinates of
Tssr109845 1171 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239284210
MGI SNP Detail		 Chr11:86247876 Med13 within coordinates of
Tssr109845 1168 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G C G G G G G G G
rs252622101
MGI SNP Detail		 Chr11:86247983 Med13 within coordinates of
Tssr109845 1061 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215685044
MGI SNP Detail		 Chr11:86247994 Med13 within coordinates of
Tssr109845 1050 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235385953
MGI SNP Detail		 Chr11:86248078 Cpgi3473 within coordinates of
Med13 within coordinates of
Tssr109845 966 bp downstream
 SNP A/G G A A A A G A A A A A A A G A G A A A A A A A G A G A A A A A A A A A A A A A A G A A A G A A
rs254886217
MGI SNP Detail		 Chr11:86248106 Cpgi3473 within coordinates of
Med13 within coordinates of
Tssr109845 938 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C T C C C C C C C C
rs217878057
MGI SNP Detail		 Chr11:86248107 Cpgi3473 within coordinates of
Med13 within coordinates of
Tssr109845 937 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235408862
MGI SNP Detail		 Chr11:86248705 Cpgi3473 within coordinates of
Tssr109845 339 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs261988644
MGI SNP Detail		 Chr11:86248805 Cpgi3473 within coordinates of
Tssr109845 239 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G A G G G G G G G G
rs223422465
MGI SNP Detail		 Chr11:86249172 Cpgi3473 within coordinates of
Rr402823 within coordinates of
Tssr109845 119 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G T G G G G G G G
rs247642791
MGI SNP Detail		 Chr11:86249196 Cpgi3473 within coordinates of
Rr402823 within coordinates of
Tssr109845 143 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs258010450
MGI SNP Detail		 Chr11:86249246 Cpgi3473 within coordinates of
Rr402823 within coordinates of
Tssr109845 193 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G C G G G G G G G
rs586956532
MGI SNP Detail		 Chr11:86249623 Tssr109845 570 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs241009175
MGI SNP Detail		 Chr11:86249736 Tssr109845 683 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259912374
MGI SNP Detail		 Chr11:86249749 Tssr109845 696 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223586733
MGI SNP Detail		 Chr11:86249764 Tssr109845 711 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G A G G G G G G G G
rs249998746
MGI SNP Detail		 Chr11:86249789 Tssr109845 736 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265167077
MGI SNP Detail		 Chr11:86249799 Tssr109845 746 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C T C C C C C C C C
rs231301518
MGI SNP Detail		 Chr11:86249828 Tssr109845 775 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257600097
MGI SNP Detail		 Chr11:86249883 Tssr109845 830 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216190382
MGI SNP Detail		 Chr11:86249996 Tssr109845 943 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235318202
MGI SNP Detail		 Chr11:86250000 Tssr109845 947 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248593981
MGI SNP Detail		 Chr11:86250005 Tssr109845 952 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs211866811
MGI SNP Detail		 Chr11:86250142 Tssr109845 1089 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs580078324
MGI SNP Detail		 Chr11:86250267 Tssr109845 1214 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236822444
MGI SNP Detail		 Chr11:86250290 Tssr109845 1237 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs256803896
MGI SNP Detail		 Chr11:86250386 Tssr109845 1333 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215108850
MGI SNP Detail		 Chr11:86250463 Tssr109845 1410 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237856776
MGI SNP Detail		 Chr11:86250527 Tssr109845 1474 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs251805025
MGI SNP Detail		 Chr11:86250642 Tssr109845 1589 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221884575
MGI SNP Detail		 Chr11:86250669 Tssr109845 1616 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs240976747
MGI SNP Detail		 Chr11:86250688 Tssr109845 1635 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G A G G G A G G A G
rs253327126
MGI SNP Detail		 Chr11:86250817 Gm38937 within coordinates of
Tssr109845 1764 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220703107
MGI SNP Detail		 Chr11:86250853 Gm38937 within coordinates of
Tssr109845 1800 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs245108944
MGI SNP Detail		 Chr11:86250871 Gm38937 within coordinates of
Tssr109845 1818 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262431550
MGI SNP Detail		 Chr11:86250918 Gm38937 within coordinates of
Tssr109845 1865 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231564375
MGI SNP Detail		 Chr11:86251025 Gm38937 within coordinates of
Tssr109845 1972 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T A T T T T T T T T
rs240902290
MGI SNP Detail		 Chr11:86251053 Gm38937 within coordinates of
Tssr109845 2000 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 46 of 46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory