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Mouse SNP Summary
Symbol
Name
ID 		Tssr110254
transcription start site region 110254
MGI:6038021

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Showing SNP(s) 1 - 74 of 74

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SNP Density Heatmap
Chr11 from 94,965,392 bp to 94,969,415 bp
(4,024 bp)
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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231916517
MGI SNP Detail		 Chr11:94965421 Itga3 within coordinates of
Tssr110254 1971 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A
rs27086784
MGI SNP Detail		 Chr11:94965427 Itga3 within coordinates of
Tssr110254 1965 bp downstream
 SNP C/G C C G G C C G G C C C G C C G
rs214708774
MGI SNP Detail		 Chr11:94965444 Itga3 within coordinates of
Tssr110254 1948 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27086783
MGI SNP Detail		 Chr11:94965458 Itga3 within coordinates of
Tssr110254 1934 bp downstream
 SNP C/T T T T T T T T T T T C T T T T
rs231736024
MGI SNP Detail		 Chr11:94965465 Itga3 within coordinates of
Tssr110254 1927 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243402201
MGI SNP Detail		 Chr11:94965548 Itga3 within coordinates of
Tssr110254 1844 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A
rs221157967
MGI SNP Detail		 Chr11:94965621 Itga3 within coordinates of
Tssr110254 1771 bp downstream
 SNP A/G A G
rs212477477
MGI SNP Detail		 Chr11:94965962 Itga3 within coordinates of
Tssr110254 1430 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578328766
MGI SNP Detail		 Chr11:94965992 Itga3 within coordinates of
Tssr110254 1400 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs240350131
MGI SNP Detail		 Chr11:94966043 Itga3 within coordinates of
Tssr110254 1349 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27086782
MGI SNP Detail		 Chr11:94966049 Itga3 within coordinates of
Tssr110254 1343 bp downstream
 SNP A/T A A A A A A A A A A T A A A A
rs263790392
MGI SNP Detail		 Chr11:94966140 Itga3 within coordinates of
Tssr110254 1252 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27086781
MGI SNP Detail		 Chr11:94966321 Itga3 within coordinates of
Tssr110254 1071 bp downstream
 SNP A/G A A G A A G A A A A G A A G A
rs240236971
MGI SNP Detail		 Chr11:94966334 Itga3 within coordinates of
Tssr110254 1058 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27086780
MGI SNP Detail		 Chr11:94966490 Itga3 within coordinates of
Tssr110254 902 bp downstream
 SNP C/T C C C C C T
rs219483222
MGI SNP Detail		 Chr11:94966509 Itga3 within coordinates of
Tssr110254 883 bp downstream
 SNP A/G G G G A A G G G G A A A G G G G G G G A A G A G G G G A G G G G G G G G G G G G A G A G G G G G G G G G G
rs237961260
MGI SNP Detail		 Chr11:94966520 Itga3 within coordinates of
Tssr110254 872 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs249550324
MGI SNP Detail		 Chr11:94966558 Itga3 within coordinates of
Tssr110254 834 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227139246
MGI SNP Detail		 Chr11:94966565 Itga3 within coordinates of
Tssr110254 827 bp downstream
 SNP A/G G G G A A G G G G A A A G G G G G G G A A G A G G G G A G G G G G G G G G G G G A G A G G G G G G G G G G
rs246982807
MGI SNP Detail		 Chr11:94966567 Itga3 within coordinates of
Tssr110254 825 bp downstream
 SNP A/G G G G A A G G G G A A A G G G G G G G A A G A G G G G A G G G G G G G G G G G G A G A G G G G G G G G G G
rs27086779
MGI SNP Detail		 Chr11:94966586 Itga3 within coordinates of
Tssr110254 806 bp downstream
 SNP A/G A A A A A G
rs231437022
MGI SNP Detail		 Chr11:94966663 Itga3 within coordinates of
Tssr110254 729 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238190337
MGI SNP Detail		 Chr11:94966693 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 699 bp downstream
 SNP C/T T T T C C T T T T C C C T T T T T T T C C T C T T T T C T T T T T T T T T T T T C T C T T T T T C T T T T
rs27086778
MGI SNP Detail		 Chr11:94966695 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 697 bp downstream
 SNP A/G G A A G G A G G G G G G A G
rs225567045
MGI SNP Detail		 Chr11:94966747 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 645 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243343188
MGI SNP Detail		 Chr11:94966774 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 618 bp downstream
 SNP G/T G G G T T G G G G T T G G G G G G G T T G T G G G G T G G G G G G G G G G G T G T G G G G G G G G G G
rs212414982
MGI SNP Detail		 Chr11:94966795 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 597 bp downstream
 SNP A/G A A A G G A A A A G G A A A A A A A G G A G A A A A G A A A A A A A A A A A G A G A A A A A G A A A A
rs235795418
MGI SNP Detail		 Chr11:94966828 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 564 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253976392
MGI SNP Detail		 Chr11:94966832 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 560 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29462438
MGI SNP Detail		 Chr11:94966968 Cpgi3575 within coordinates of
Itga3 within coordinates of
Tssr110254 424 bp downstream
 SNP C/T T C T T
rs238031474
MGI SNP Detail		 Chr11:94967130 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Itga3 within coordinates of
Tssr110254 262 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs241327538
MGI SNP Detail		 Chr11:94967262 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Itga3 within coordinates of
Tssr110254 130 bp downstream
 SNP C/T T C
rs213833404
MGI SNP Detail		 Chr11:94967460 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Itga3 within coordinates of
Tssr110254 45 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29457717
MGI SNP Detail		 Chr11:94967498 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Itga3 within coordinates of
Tssr110254 83 bp upstream
Tssr110256 within coordinates of
 SNP C/T T C T T
rs29431137
MGI SNP Detail		 Chr11:94967505 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Itga3 within coordinates of
Tssr110254 90 bp upstream
Tssr110256 within coordinates of
 SNP A/G G A G G
rs29434283
MGI SNP Detail		 Chr11:94967577 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Itga3 within coordinates of
Tssr110254 162 bp upstream
 SNP A/G G A G G
rs265311091
MGI SNP Detail		 Chr11:94967616 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Itga3 within coordinates of
Tssr110254 201 bp upstream
 SNP C/T C T
rs259077606
MGI SNP Detail		 Chr11:94967722 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 307 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223731227
MGI SNP Detail		 Chr11:94967754 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 339 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238078224
MGI SNP Detail		 Chr11:94967856 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 441 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255116255
MGI SNP Detail		 Chr11:94968024 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 609 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs29402794
MGI SNP Detail		 Chr11:94968063 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 648 bp upstream
 SNP A/G A G G
rs236969623
MGI SNP Detail		 Chr11:94968085 Cpgi3575 within coordinates of
Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 670 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29470113
MGI SNP Detail		 Chr11:94968203 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 788 bp upstream
 SNP G/T T G
rs29474276
MGI SNP Detail		 Chr11:94968216 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 801 bp upstream
 SNP A/G A G
rs259691833
MGI SNP Detail		 Chr11:94968232 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 817 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs222899962
MGI SNP Detail		 Chr11:94968259 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 844 bp upstream
 SNP A/G A G
rs241605901
MGI SNP Detail		 Chr11:94968265 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 850 bp upstream
 SNP A/G G A
rs50234658
MGI SNP Detail		 Chr11:94968286 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 871 bp upstream
 SNP G G
rs230913594
MGI SNP Detail		 Chr11:94968299 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 884 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49730852
MGI SNP Detail		 Chr11:94968329 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 914 bp upstream
 SNP A A
rs229507938
MGI SNP Detail		 Chr11:94968339 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 924 bp upstream
 SNP A/G G A
rs29402258
MGI SNP Detail		 Chr11:94968391 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 976 bp upstream
 SNP C/T T C
rs29469154
MGI SNP Detail		 Chr11:94968578 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1163 bp upstream
 SNP C/T T C C
rs29479071
MGI SNP Detail		 Chr11:94968591 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1176 bp upstream
 SNP A/G A G A A
rs29439345
MGI SNP Detail		 Chr11:94968605 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1190 bp upstream
 SNP G/T T G T T
rs249422062
MGI SNP Detail		 Chr11:94968621 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1206 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29433172
MGI SNP Detail		 Chr11:94968677 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1262 bp upstream
 SNP A/G A G A A G A
rs263925447
MGI SNP Detail		 Chr11:94968743 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1328 bp upstream
 SNP A/T A T
rs29387587
MGI SNP Detail		 Chr11:94968764 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1349 bp upstream
 SNP C/T C T C C T C
rs227458984
MGI SNP Detail		 Chr11:94968782 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1367 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T A T T T T
rs247831866
MGI SNP Detail		 Chr11:94968812 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1397 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265801301
MGI SNP Detail		 Chr11:94968853 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1438 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227736118
MGI SNP Detail		 Chr11:94968984 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1569 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248834028
MGI SNP Detail		 Chr11:94969061 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1646 bp upstream
 SNP A/G G A
rs257650580
MGI SNP Detail		 Chr11:94969070 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1655 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225123000
MGI SNP Detail		 Chr11:94969089 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1674 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252903123
MGI SNP Detail		 Chr11:94969097 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1682 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29405735
MGI SNP Detail		 Chr11:94969199 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1784 bp upstream
 SNP A/G G A G G A G
rs241886024
MGI SNP Detail		 Chr11:94969225 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1810 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs253045648
MGI SNP Detail		 Chr11:94969226 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1811 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs215162472
MGI SNP Detail		 Chr11:94969333 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1918 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232144002
MGI SNP Detail		 Chr11:94969357 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1942 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29429497
MGI SNP Detail		 Chr11:94969405 Gm53645 within coordinates of
Gm57362 within coordinates of
Tssr110254 1990 bp upstream
 SNP A/G A G
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Showing SNP(s) 1 - 74 of 74
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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MGI 6.24 		The Jackson Laboratory