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Mouse SNP Summary
Symbol
Name
ID 		Tssr112480
transcription start site region 112480
MGI:6040247

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582660903
MGI SNP Detail		 Chr12:3398214 Gm26520 within coordinates of
Tssr112480 1973 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586091628
MGI SNP Detail		 Chr12:3398224 Gm26520 within coordinates of
Tssr112480 1963 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580138042
MGI SNP Detail		 Chr12:3398287 Gm26520 within coordinates of
Tssr112480 1900 bp upstream
 SNP A/G G G G G G G G A G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs583482379
MGI SNP Detail		 Chr12:3398319 Gm26520 within coordinates of
Tssr112480 1868 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs587032291
MGI SNP Detail		 Chr12:3398321 Gm26520 within coordinates of
Tssr112480 1866 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579776639
MGI SNP Detail		 Chr12:3398323 Gm26520 within coordinates of
Tssr112480 1864 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs583045730
MGI SNP Detail		 Chr12:3398332 Gm26520 within coordinates of
Tssr112480 1855 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs586611729
MGI SNP Detail		 Chr12:3398450 Gm26520 within coordinates of
Tssr112480 1737 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233696093
MGI SNP Detail		 Chr12:3398457 Gm26520 within coordinates of
Tssr112480 1730 bp upstream
 SNP C/T T T T C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C C C C C C C C C
rs253120295
MGI SNP Detail		 Chr12:3398512 Gm26520 within coordinates of
Tssr112480 1675 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs581534062
MGI SNP Detail		 Chr12:3398573 Gm26520 within coordinates of
Tssr112480 1614 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585117460
MGI SNP Detail		 Chr12:3398582 Gm26520 within coordinates of
Tssr112480 1605 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs587390633
MGI SNP Detail		 Chr12:3398609 Gm26520 within coordinates of
Tssr112480 1578 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215159473
MGI SNP Detail		 Chr12:3398623 Gm26520 within coordinates of
Tssr112480 1564 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs232592084
MGI SNP Detail		 Chr12:3398645 Gm26520 within coordinates of
Tssr112480 1542 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251149652
MGI SNP Detail		 Chr12:3398675 Gm26520 within coordinates of
Tssr112480 1512 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213026246
MGI SNP Detail		 Chr12:3398837 Gm26520 within coordinates of
Tssr112480 1350 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs246921069
MGI SNP Detail		 Chr12:3398855 Gm26520 within coordinates of
Tssr112480 1332 bp upstream
 SNP C C C
rs234883400
MGI SNP Detail		 Chr12:3398868 Gm26520 within coordinates of
Tssr112480 1319 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs214846253
MGI SNP Detail		 Chr12:3398900 Gm26520 within coordinates of
Tssr112480 1287 bp upstream
 SNP G G G
rs581269170
MGI SNP Detail		 Chr12:3398937 Gm26520 within coordinates of
Tssr112480 1250 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs225797045
MGI SNP Detail		 Chr12:3398964 Gm26520 within coordinates of
Tssr112480 1223 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241169333
MGI SNP Detail		 Chr12:3398992 Gm26520 within coordinates of
Tssr112480 1195 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251528883
MGI SNP Detail		 Chr12:3398995 Gm26520 within coordinates of
Tssr112480 1192 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs229586695
MGI SNP Detail		 Chr12:3399042 Gm26520 within coordinates of
Tssr112480 1145 bp upstream
 SNP A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584910692
MGI SNP Detail		 Chr12:3399063 Gm26520 within coordinates of
Tssr112480 1124 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs254278600
MGI SNP Detail		 Chr12:3399090 Gm26520 within coordinates of
Tssr112480 1097 bp upstream
 SNP T T T
rs213638924
MGI SNP Detail		 Chr12:3399098 Gm26520 within coordinates of
Tssr112480 1089 bp upstream
 SNP T T T
rs581007317
MGI SNP Detail		 Chr12:3399106 Gm26520 within coordinates of
Tssr112480 1081 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs584060237
MGI SNP Detail		 Chr12:3399396 Gm26520 within coordinates of
Rr269408 within coordinates of
Tssr112480 791 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578266385
MGI SNP Detail		 Chr12:3399418 Gm26520 within coordinates of
Rr269408 within coordinates of
Tssr112480 769 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582924826
MGI SNP Detail		 Chr12:3399483 Gm26520 within coordinates of
Rr269408 within coordinates of
Tssr112480 704 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs50516183
MGI SNP Detail		 Chr12:3399538 Gm26520 within coordinates of
Rr269408 within coordinates of
Tssr112480 649 bp upstream
 SNP C/T C C C C C C C C C C T C C T C
rs240875325
MGI SNP Detail		 Chr12:3399781 Gm26520 within coordinates of
Rr269408 within coordinates of
Tssr112480 406 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs266083996
MGI SNP Detail		 Chr12:3399802 Gm26520 within coordinates of
Rr269408 within coordinates of
Tssr112480 385 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232779515
MGI SNP Detail		 Chr12:3399983 Gm26520 within coordinates of
Rr269408 within coordinates of
Rr269409 within coordinates of
Tssr112480 204 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246972350
MGI SNP Detail		 Chr12:3400022 Gm26520 within coordinates of
Rr269409 within coordinates of
Tssr112480 165 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs259063382
MGI SNP Detail		 Chr12:3400145 Gm26520 within coordinates of
Tssr112480 42 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226559863
MGI SNP Detail		 Chr12:3400215 Gm26520 within coordinates of
Tssr112480 19 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50832757
MGI SNP Detail		 Chr12:3400361 Gm26520 within coordinates of
Tssr112480 165 bp downstream
 SNP A/G G G G G G G G G G G A G G A G
rs212708912
MGI SNP Detail		 Chr12:3400525 Gm26520 within coordinates of
Tssr112480 329 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236088934
MGI SNP Detail		 Chr12:3400582 Gm26520 within coordinates of
Tssr112480 386 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs254825046
MGI SNP Detail		 Chr12:3400595 Gm26520 within coordinates of
Tssr112480 399 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218334165
MGI SNP Detail		 Chr12:3400700 Gm26520 within coordinates of
Tssr112480 504 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238743809
MGI SNP Detail		 Chr12:3400749 Gm26520 within coordinates of
Tssr112480 553 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C C T C C C C
rs251348000
MGI SNP Detail		 Chr12:3400891 Gm26520 within coordinates of
Tssr112480 695 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220346749
MGI SNP Detail		 Chr12:3401026 Gm26520 within coordinates of
Tssr112480 830 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs231783242
MGI SNP Detail		 Chr12:3401044 Gm26520 within coordinates of
Tssr112480 848 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249294361
MGI SNP Detail		 Chr12:3401122 Gm26520 within coordinates of
Tssr112480 926 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220750532
MGI SNP Detail		 Chr12:3401186 Gm26520 within coordinates of
Tssr112480 990 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251748850
MGI SNP Detail		 Chr12:3401191 Gm26520 within coordinates of
Tssr112480 995 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs264291535
MGI SNP Detail		 Chr12:3401196 Gm26520 within coordinates of
Tssr112480 1000 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225979789
MGI SNP Detail		 Chr12:3401249 Gm26520 within coordinates of
Tssr112480 1053 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240987789
MGI SNP Detail		 Chr12:3401264 Gm26520 within coordinates of
Tssr112480 1068 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586270145
MGI SNP Detail		 Chr12:3401302 Gm26520 within coordinates of
Tssr112480 1106 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258815003
MGI SNP Detail		 Chr12:3401313 Gm26520 within coordinates of
Tssr112480 1117 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226264571
MGI SNP Detail		 Chr12:3401354 Gm26520 within coordinates of
Tssr112480 1158 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244952613
MGI SNP Detail		 Chr12:3401363 Gm26520 within coordinates of
Tssr112480 1167 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264855396
MGI SNP Detail		 Chr12:3401366 Gm26520 within coordinates of
Tssr112480 1170 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227466879
MGI SNP Detail		 Chr12:3401445 Gm26520 within coordinates of
Tssr112480 1249 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260073208
MGI SNP Detail		 Chr12:3401558 Gm26520 within coordinates of
Tssr112480 1362 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs218273023
MGI SNP Detail		 Chr12:3401568 Gm26520 within coordinates of
Tssr112480 1372 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs233754132
MGI SNP Detail		 Chr12:3401582 Gm26520 within coordinates of
Tssr112480 1386 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs245322782
MGI SNP Detail		 Chr12:3401603 Gm26520 within coordinates of
Tssr112480 1407 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs214442861
MGI SNP Detail		 Chr12:3401616 Gm26520 within coordinates of
Tssr112480 1420 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231504459
MGI SNP Detail		 Chr12:3401633 Gm26520 within coordinates of
Tssr112480 1437 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs249233593
MGI SNP Detail		 Chr12:3401707 Gm26520 within coordinates of
Tssr112480 1511 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212739509
MGI SNP Detail		 Chr12:3401758 Gm26520 within coordinates of
Tssr112480 1562 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs240591287
MGI SNP Detail		 Chr12:3401812 Gm26520 within coordinates of
Tssr112480 1616 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263948418
MGI SNP Detail		 Chr12:3401976 Gm26520 within coordinates of
Tssr112480 1780 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225515291
MGI SNP Detail		 Chr12:3402001 Gm26520 within coordinates of
Tssr112480 1805 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241046485
MGI SNP Detail		 Chr12:3402040 Gm26520 within coordinates of
Tssr112480 1844 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 72 of 72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory