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Mouse SNP Summary
Symbol
Name
ID
Tssr114406
transcription start site region 114406
MGI:6042173

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259352893
MGI SNP Detail
Chr12:85531097 Gm56541 within coordinates of
Tssr114406 1906 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs213490643
MGI SNP Detail
Chr12:85531099 Gm56541 within coordinates of
Tssr114406 1904 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232636553
MGI SNP Detail
Chr12:85531120 Gm56541 within coordinates of
Tssr114406 1883 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs249627530
MGI SNP Detail
Chr12:85531172 Gm56541 within coordinates of
Tssr114406 1831 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218833956
MGI SNP Detail
Chr12:85531182 Gm56541 within coordinates of
Tssr114406 1821 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242310389
MGI SNP Detail
Chr12:85531189 Gm56541 within coordinates of
Tssr114406 1814 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263776133
MGI SNP Detail
Chr12:85531209 Gm56541 within coordinates of
Tssr114406 1794 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226941393
MGI SNP Detail
Chr12:85531229 Gm56541 within coordinates of
Tssr114406 1774 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs247954374
MGI SNP Detail
Chr12:85531264 Gm56541 within coordinates of
Tssr114406 1739 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258395899
MGI SNP Detail
Chr12:85531347 Gm56541 within coordinates of
Tssr114406 1656 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225644296
MGI SNP Detail
Chr12:85531368 Gm56541 within coordinates of
Tssr114406 1635 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs238644718
MGI SNP Detail
Chr12:85531395 Gm56541 within coordinates of
Tssr114406 1608 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254268711
MGI SNP Detail
Chr12:85531401 Gm56541 within coordinates of
Tssr114406 1602 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs229654050
MGI SNP Detail
Chr12:85531423 Gm56541 within coordinates of
Tssr114406 1580 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253644903
MGI SNP Detail
Chr12:85531611 Gm56541 within coordinates of
Tssr114406 1392 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs266039978
MGI SNP Detail
Chr12:85531621 Gm56541 within coordinates of
Tssr114406 1382 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231453483
MGI SNP Detail
Chr12:85531680 Gm56541 within coordinates of
Tssr114406 1323 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247098606
MGI SNP Detail
Chr12:85531728 Gm56541 within coordinates of
Tssr114406 1275 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C C C C C T C
rs213430900
MGI SNP Detail
Chr12:85531855 Gm56541 within coordinates of
Tssr114406 1148 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232686432
MGI SNP Detail
Chr12:85531857 Gm56541 within coordinates of
Tssr114406 1146 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243392589
MGI SNP Detail
Chr12:85531874 Gm56541 within coordinates of
Tssr114406 1129 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212869959
MGI SNP Detail
Chr12:85531912 Gm56541 within coordinates of
Tssr114406 1091 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242013865
MGI SNP Detail
Chr12:85531977 Gm56541 within coordinates of
Tssr114406 1026 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs260335722
MGI SNP Detail
Chr12:85532005 Gm56541 within coordinates of
Tssr114406 998 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227193077
MGI SNP Detail
Chr12:85532016 Gm56541 within coordinates of
Tssr114406 987 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237952221
MGI SNP Detail
Chr12:85532035 Gm56541 within coordinates of
Tssr114406 968 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs252134032
MGI SNP Detail
Chr12:85532192 Gm56541 within coordinates of
Tssr114406 811 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219505496
MGI SNP Detail
Chr12:85532199 Gm56541 within coordinates of
Tssr114406 804 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238687261
MGI SNP Detail
Chr12:85532225 Gm56541 within coordinates of
Tssr114406 778 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254121542
MGI SNP Detail
Chr12:85532234 Gm56541 within coordinates of
Tssr114406 769 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222133068
MGI SNP Detail
Chr12:85532293 Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 710 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250569362
MGI SNP Detail
Chr12:85532302 Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 701 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264604408
MGI SNP Detail
Chr12:85532310 Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 693 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231791042
MGI SNP Detail
Chr12:85532321 Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 682 bp upstream
SNP A/C/T T T T T T T T T T T T T T T T T T T T C T C T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs246942397
MGI SNP Detail
Chr12:85532439 Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 564 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A G A
rs257357440
MGI SNP Detail
Chr12:85532480 Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 523 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs226327636
MGI SNP Detail
Chr12:85532553 Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 450 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243430340
MGI SNP Detail
Chr12:85532606 Cpgi4899 within coordinates of
Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 397 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213044855
MGI SNP Detail
Chr12:85532671 Cpgi4899 within coordinates of
Gm56541 within coordinates of
Gm60138 within coordinates of
Tssr114406 332 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239465026
MGI SNP Detail
Chr12:85532909 Cpgi4899 within coordinates of
Gm60138 within coordinates of
Tssr114406 94 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs260220556
MGI SNP Detail
Chr12:85532981 Cpgi4899 within coordinates of
Gm60138 within coordinates of
Tssr114406 22 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215688055
MGI SNP Detail
Chr12:85532991 Cpgi4899 within coordinates of
Gm60138 within coordinates of
Tssr114406 12 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs240101080
MGI SNP Detail
Chr12:85533049 Cpgi4899 within coordinates of
Gm60138 within coordinates of
Tssr114406 26 bp downstream
Tssr114407 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251989870
MGI SNP Detail
Chr12:85533138 Cpgi4899 within coordinates of
Gm60138 within coordinates of
Tssr114406 115 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219534847
MGI SNP Detail
Chr12:85533164 Cpgi4899 within coordinates of
Gm60138 within coordinates of
Tssr114406 141 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232255653
MGI SNP Detail
Chr12:85533215 Cpgi4899 within coordinates of
Gm60138 within coordinates of
Tssr114406 192 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248431972
MGI SNP Detail
Chr12:85533417 Gm60138 within coordinates of
Tssr114406 394 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs221482130
MGI SNP Detail
Chr12:85533480 Gm60138 within coordinates of
Tssr114406 457 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247795216
MGI SNP Detail
Chr12:85533489 Gm60138 within coordinates of
Tssr114406 466 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs37162490
MGI SNP Detail
Chr12:85533795 Cpgi4900 within coordinates of
Gm60138 within coordinates of
Rr369567 within coordinates of
Tssr114406 772 bp downstream
SNP C/T T T C T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224546636
MGI SNP Detail
Chr12:85533900 Cpgi4900 within coordinates of
Gm60138 within coordinates of
Tssr114406 877 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241010346
MGI SNP Detail
Chr12:85533956 Gm60138 within coordinates of
Tssr114406 933 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs257199047
MGI SNP Detail
Chr12:85534082 Gm60138 within coordinates of
Tssr114406 1059 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226362392
MGI SNP Detail
Chr12:85534117 Gm60138 within coordinates of
Tssr114406 1094 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs236918261
MGI SNP Detail
Chr12:85534137 Gm60138 within coordinates of
Tssr114406 1114 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261825891
MGI SNP Detail
Chr12:85534140 Gm60138 within coordinates of
Tssr114406 1117 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233966515
MGI SNP Detail
Chr12:85534234 Gm60138 within coordinates of
Tssr114406 1211 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254574724
MGI SNP Detail
Chr12:85534385 Gm60138 within coordinates of
Tssr114406 1362 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs216176456
MGI SNP Detail
Chr12:85534396 Gm60138 within coordinates of
Tssr114406 1373 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227520758
MGI SNP Detail
Chr12:85534415 Gm60138 within coordinates of
Tssr114406 1392 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246066990
MGI SNP Detail
Chr12:85534436 Gm60138 within coordinates of
Tssr114406 1413 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs213679031
MGI SNP Detail
Chr12:85534495 Gm60138 within coordinates of
Tssr114406 1472 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs232199255
MGI SNP Detail
Chr12:85534738 Gm60138 within coordinates of
Rr403417 within coordinates of
Tssr114406 1715 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261067997
MGI SNP Detail
Chr12:85534744 Gm60138 within coordinates of
Rr403417 within coordinates of
Tssr114406 1721 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212992352
MGI SNP Detail
Chr12:85534783 Gm60138 within coordinates of
Rr403417 within coordinates of
Tssr114406 1760 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242452857
MGI SNP Detail
Chr12:85534812 Gm60138 within coordinates of
Rr403417 within coordinates of
Tssr114406 1789 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261081209
MGI SNP Detail
Chr12:85535014 Tssr114406 1991 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 67 of 67

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory