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Mouse SNP Summary
Symbol
Name
ID 		Tssr115196
transcription start site region 115196
MGI:6042963

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229292477
MGI SNP Detail		 Chr12:110339950 Cpgi5113 within coordinates of
Rr472872 within coordinates of
Tssr115196 1997 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33316555
MGI SNP Detail		 Chr12:110340034 Cpgi5113 within coordinates of
Rr472872 within coordinates of
Rr472873 within coordinates of
Tssr115196 1913 bp upstream
 SNP C/T C C C C C C C C C C C T C C C
rs29222692
MGI SNP Detail		 Chr12:110340059 Cpgi5113 within coordinates of
Rr472872 within coordinates of
Tssr115196 1888 bp upstream
 SNP A/G A G A G
rs29177323
MGI SNP Detail		 Chr12:110340294 Rr472872 within coordinates of
Tssr115196 1653 bp upstream
 SNP A/G A G A G
rs29212805
MGI SNP Detail		 Chr12:110340297 Rr472872 within coordinates of
Tssr115196 1650 bp upstream
 SNP A/G A G A A
rs29192450
MGI SNP Detail		 Chr12:110340367 Rr472872 within coordinates of
Tssr115196 1580 bp upstream
 SNP A/G G A G A A G
rs29164472
MGI SNP Detail		 Chr12:110340386 Rr472872 within coordinates of
Tssr115196 1561 bp upstream
 SNP C/T C T C C
rs237022634
MGI SNP Detail		 Chr12:110340390 Rr472872 within coordinates of
Tssr115196 1557 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T C C T T T T T T C T T T T T T T C T T T T
rs33316557
MGI SNP Detail		 Chr12:110340567 Tssr115196 1380 bp upstream
 SNP C/T C C C C C C C C C T T C C T C
rs217133261
MGI SNP Detail		 Chr12:110340596 Tssr115196 1351 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233995458
MGI SNP Detail		 Chr12:110340639 Tssr115196 1308 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs251617932
MGI SNP Detail		 Chr12:110340709 Tssr115196 1238 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33312444
MGI SNP Detail		 Chr12:110340890 Tssr115196 1057 bp upstream
 SNP C/G G G G G G G G G G C C G G C G
rs236952657
MGI SNP Detail		 Chr12:110340918 Tssr115196 1029 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261964712
MGI SNP Detail		 Chr12:110340995 Tssr115196 952 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33312447
MGI SNP Detail		 Chr12:110341006 Tssr115196 941 bp upstream
 SNP A/G G G A G G G G A G G A G A G G G G
rs33312450
MGI SNP Detail		 Chr12:110341017 Tssr115196 930 bp upstream
 SNP C/G C G C C C C C C C C C C C C
rs249793059
MGI SNP Detail		 Chr12:110341032 Tssr115196 915 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A A T T T A A T T T T T T A T T T T T T T T T T T T
rs223573515
MGI SNP Detail		 Chr12:110341035 Tssr115196 912 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G G C C C G G C C C C C C G C C C C C C C C C C C C
rs242085665
MGI SNP Detail		 Chr12:110341063 Tssr115196 884 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33312453
MGI SNP Detail		 Chr12:110341070 Tssr115196 877 bp upstream
 SNP C/T C C C C C C C C C T T C C T C
rs33313346
MGI SNP Detail		 Chr12:110341103 Tssr115196 844 bp upstream
 SNP A/G G G G G G G G G G G G G G A G
rs33313349
MGI SNP Detail		 Chr12:110341116 Tssr115196 831 bp upstream
 SNP A/C C C C C C C C C C A A C C A C
rs265155192
MGI SNP Detail		 Chr12:110341144 Tssr115196 803 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229148764
MGI SNP Detail		 Chr12:110341180 Tssr115196 767 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242526023
MGI SNP Detail		 Chr12:110341190 Tssr115196 757 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217170201
MGI SNP Detail		 Chr12:110341202 Tssr115196 745 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228057960
MGI SNP Detail		 Chr12:110341302 Tssr115196 645 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29185323
MGI SNP Detail		 Chr12:110341342 Tssr115196 605 bp upstream
 SNP A/G A A A G A A A A A G A A A G A A A
rs215286632
MGI SNP Detail		 Chr12:110341358 Tssr115196 589 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239008553
MGI SNP Detail		 Chr12:110341390 Tssr115196 557 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257056050
MGI SNP Detail		 Chr12:110341403 Tssr115196 544 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213165145
MGI SNP Detail		 Chr12:110341421 Tssr115196 526 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs33314164
MGI SNP Detail		 Chr12:110341481 Rr472874 within coordinates of
Tssr115196 466 bp upstream
 SNP G/T G G G G G G T G G G G G G G G
rs29176658
MGI SNP Detail		 Chr12:110341514 Rr472874 within coordinates of
Tssr115196 433 bp upstream
 SNP A/G A A G G A A A A G G A G G G G A G A A
rs579437874
MGI SNP Detail		 Chr12:110341609 Rr472874 within coordinates of
Tssr115196 338 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29206074
MGI SNP Detail		 Chr12:110341635 Rr472874 within coordinates of
Tssr115196 312 bp upstream
 SNP C/T C T C C
rs242147177
MGI SNP Detail		 Chr12:110342296 Tssr115196 345 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33314169
MGI SNP Detail		 Chr12:110342353 Tssr115196 402 bp downstream
 SNP A/G A A G A A A A G A A G A G A A A A
rs33314172
MGI SNP Detail		 Chr12:110342374 Tssr115196 423 bp downstream
 SNP C/G G G G G G G G G G C G G G
rs247357286
MGI SNP Detail		 Chr12:110342378 Tssr115196 427 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33315025
MGI SNP Detail		 Chr12:110342379 Tssr115196 428 bp downstream
 SNP A/G A A A A A A A A A G A A G A
rs229637496
MGI SNP Detail		 Chr12:110342423 Tssr115196 472 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236164522
MGI SNP Detail		 Chr12:110342454 Tssr115196 503 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260129188
MGI SNP Detail		 Chr12:110342466 Tssr115196 515 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33315028
MGI SNP Detail		 Chr12:110342491 Tssr115196 540 bp downstream
 SNP G/T G G G G G G T G G G G G G G G
rs49733158
MGI SNP Detail		 Chr12:110342540 Tssr115196 589 bp downstream
 SNP G G
rs29179396
MGI SNP Detail		 Chr12:110342547 Tssr115196 596 bp downstream
 SNP A/G G G A G
rs29143760
MGI SNP Detail		 Chr12:110342593 Tssr115196 642 bp downstream
 SNP C/G G G C G G G G G G G G G G G G G G
rs33315033
MGI SNP Detail		 Chr12:110342671 Tssr115196 720 bp downstream
 SNP A/G G G G G G G G G G A A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245774161
MGI SNP Detail		 Chr12:110342711 Tssr115196 760 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244476498
MGI SNP Detail		 Chr12:110342777 Tssr115196 826 bp downstream
 SNP A/G A G
rs230639172
MGI SNP Detail		 Chr12:110342780 Tssr115196 829 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs254785382
MGI SNP Detail		 Chr12:110342789 Tssr115196 838 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212821087
MGI SNP Detail		 Chr12:110342792 Tssr115196 841 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229854312
MGI SNP Detail		 Chr12:110342802 Tssr115196 851 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255173208
MGI SNP Detail		 Chr12:110342848 Tssr115196 897 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs216554064
MGI SNP Detail		 Chr12:110342850 Tssr115196 899 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs33315966
MGI SNP Detail		 Chr12:110342859 Tssr115196 908 bp downstream
 SNP C/T T T T T T T T T T C C T T T T
rs235737932
MGI SNP Detail		 Chr12:110342882 Tssr115196 931 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33315969
MGI SNP Detail		 Chr12:110342883 Tssr115196 932 bp downstream
 SNP C/T T T T T T T T T T T T T T C T
rs224349883
MGI SNP Detail		 Chr12:110342885 Tssr115196 934 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs33315972
MGI SNP Detail		 Chr12:110342911 Rr472875 within coordinates of
Tssr115196 960 bp downstream
 SNP A/G A A A A A A A A A A A A A G A
rs33316495
MGI SNP Detail		 Chr12:110342953 Rr472875 within coordinates of
Tssr115196 1002 bp downstream
 SNP C/T C C C C C C T C C C C C C T C
rs219023189
MGI SNP Detail		 Chr12:110342957 Rr472875 within coordinates of
Tssr115196 1006 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236242815
MGI SNP Detail		 Chr12:110343136 Rr472875 within coordinates of
Tssr115196 1185 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260191112
MGI SNP Detail		 Chr12:110343146 Rr472875 within coordinates of
Tssr115196 1195 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583163311
MGI SNP Detail		 Chr12:110343242 Rr472875 within coordinates of
Tssr115196 1291 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs587050617
MGI SNP Detail		 Chr12:110343243 Rr472875 within coordinates of
Tssr115196 1292 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579998403
MGI SNP Detail		 Chr12:110343251 Rr472875 within coordinates of
Tssr115196 1300 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C A A C C C C C C C C C C C C C C C C C C C C
rs222186123
MGI SNP Detail		 Chr12:110343307 Rr472875 within coordinates of
Tssr115196 1356 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249423677
MGI SNP Detail		 Chr12:110343315 Rr472875 within coordinates of
Tssr115196 1364 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33316498
MGI SNP Detail		 Chr12:110343337 Tssr115196 1386 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs49183711
MGI SNP Detail		 Chr12:110343412 Tssr115196 1461 bp downstream
 SNP A/G G G A
rs250396164
MGI SNP Detail		 Chr12:110343436 Tssr115196 1485 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264770851
MGI SNP Detail		 Chr12:110343453 Tssr115196 1502 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs224220265
MGI SNP Detail		 Chr12:110343454 Tssr115196 1503 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T G T T T
rs50320663
MGI SNP Detail		 Chr12:110343616 Tssr115196 1665 bp downstream
 SNP A/C A C A
rs47422893
MGI SNP Detail		 Chr12:110343636 Tssr115196 1685 bp downstream
 SNP C/T T C C C T
rs50936750
MGI SNP Detail		 Chr12:110343669 Tssr115196 1718 bp downstream
 SNP A/T T A T
rs46489976
MGI SNP Detail		 Chr12:110343673 Tssr115196 1722 bp downstream
 SNP A/C C A C
rs47605355
MGI SNP Detail		 Chr12:110343687 Tssr115196 1736 bp downstream
 SNP C/T T C C C T
rs239151494
MGI SNP Detail		 Chr12:110343808 Tssr115196 1857 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 83 of 83
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory