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Mouse SNP Summary
Symbol
Name
ID
Tssr115538
transcription start site region 115538
MGI:6043305

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Showing SNP(s) 1 - 58 of 58

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242438602
MGI SNP Detail
Chr12:117495596 2900082C11Rik within coordinates of
Rapgef5 within coordinates of
Tssr115538 1944 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252472167
MGI SNP Detail
Chr12:117495663 2900082C11Rik within coordinates of
Rapgef5 within coordinates of
Tssr115538 1877 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs224686135
MGI SNP Detail
Chr12:117495715 2900082C11Rik within coordinates of
Rapgef5 within coordinates of
Tssr115538 1825 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs262769761
MGI SNP Detail
Chr12:117495880 2900082C11Rik within coordinates of
Rapgef5 within coordinates of
Tssr115538 1660 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs579464761
MGI SNP Detail
Chr12:117495948 Rapgef5 within coordinates of
Tssr115538 1592 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs585438758
MGI SNP Detail
Chr12:117495951 Rapgef5 within coordinates of
Tssr115538 1589 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs227979267
MGI SNP Detail
Chr12:117496032 Rapgef5 within coordinates of
Tssr115538 1508 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs236618614
MGI SNP Detail
Chr12:117496065 Rapgef5 within coordinates of
Tssr115538 1475 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254758780
MGI SNP Detail
Chr12:117496126 Rapgef5 within coordinates of
Tssr115538 1414 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs228690013
MGI SNP Detail
Chr12:117496137 Rapgef5 within coordinates of
Tssr115538 1403 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250957712
MGI SNP Detail
Chr12:117496252 Rapgef5 within coordinates of
Tssr115538 1288 bp upstream
SNP C/T T C
rs216222613
MGI SNP Detail
Chr12:117496363 Rapgef5 within coordinates of
Tssr115538 1177 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30957485
MGI SNP Detail
Chr12:117496409 Rapgef5 within coordinates of
Tssr115538 1131 bp upstream
SNP C/T T T T C T C T
rs255679112
MGI SNP Detail
Chr12:117496443 Rapgef5 within coordinates of
Tssr115538 1097 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs215231640
MGI SNP Detail
Chr12:117496469 Rapgef5 within coordinates of
Tssr115538 1071 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs30772069
MGI SNP Detail
Chr12:117496484 Rapgef5 within coordinates of
Tssr115538 1056 bp upstream
SNP A/G G G G A G A G
rs250754977
MGI SNP Detail
Chr12:117496506 Rapgef5 within coordinates of
Tssr115538 1034 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30678429
MGI SNP Detail
Chr12:117496537 Rapgef5 within coordinates of
Tssr115538 1003 bp upstream
SNP C/T C C C T C T C
rs236128982
MGI SNP Detail
Chr12:117496658 Rapgef5 within coordinates of
Tssr115538 882 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258430588
MGI SNP Detail
Chr12:117496775 Rapgef5 within coordinates of
Tssr115538 765 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs224733616
MGI SNP Detail
Chr12:117496806 Rapgef5 within coordinates of
Tssr115538 734 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs30880979
MGI SNP Detail
Chr12:117497127 Rapgef5 within coordinates of
Tssr115538 413 bp upstream
SNP C/T C C T C T C
rs30682390
MGI SNP Detail
Chr12:117497129 Rapgef5 within coordinates of
Tssr115538 411 bp upstream
SNP C/T C C T C T C
rs579760808
MGI SNP Detail
Chr12:117497160 Rapgef5 within coordinates of
Tssr115538 380 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs220421379
MGI SNP Detail
Chr12:117497177 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 363 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236555075
MGI SNP Detail
Chr12:117497271 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 269 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C C
rs258805371
MGI SNP Detail
Chr12:117497326 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 214 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G A G G G G G G G G G G G G
rs30583691
MGI SNP Detail
Chr12:117497338 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 202 bp upstream
SNP C/T C T C C C
rs241681196
MGI SNP Detail
Chr12:117497348 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 192 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263271473
MGI SNP Detail
Chr12:117497417 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 123 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs233183744
MGI SNP Detail
Chr12:117497432 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 108 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs215607592
MGI SNP Detail
Chr12:117497691 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 129 bp downstream
SNP C/T C C C C C C C C C C C C C C C T C T T C C T C T C C T C C C T T C T C C C C C C C C T
rs224599404
MGI SNP Detail
Chr12:117497721 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 159 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244639059
MGI SNP Detail
Chr12:117497925 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 363 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs233285003
MGI SNP Detail
Chr12:117498144 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 582 bp downstream
SNP A/C A C
rs236680421
MGI SNP Detail
Chr12:117498160 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 598 bp downstream
SNP A/T T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs256962634
MGI SNP Detail
Chr12:117498202 Cpgi5227 within coordinates of
Rapgef5 within coordinates of
Tssr115538 640 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51690425
MGI SNP Detail
Chr12:117498404 Rapgef5 within coordinates of
Tssr115538 842 bp downstream
SNP A/C A A C A
rs46383346
MGI SNP Detail
Chr12:117498417 Rapgef5 within coordinates of
Tssr115538 855 bp downstream
SNP C C C C C C
rs225830446
MGI SNP Detail
Chr12:117498450 Rapgef5 within coordinates of
Tssr115538 888 bp downstream
SNP A/T T A
rs244655181
MGI SNP Detail
Chr12:117498482 Rapgef5 within coordinates of
Tssr115538 920 bp downstream
SNP C/T C T
rs230668039
MGI SNP Detail
Chr12:117498629 Rapgef5 within coordinates of
Tssr115538 1067 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs30867895
MGI SNP Detail
Chr12:117498691 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1129 bp downstream
SNP A/T T T A T T T
rs222513120
MGI SNP Detail
Chr12:117498732 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1170 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G A G G G G G G G G A A G A G G G G G A G G A A
rs239141498
MGI SNP Detail
Chr12:117498751 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1189 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
rs265549252
MGI SNP Detail
Chr12:117498785 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1223 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs225172316
MGI SNP Detail
Chr12:117498799 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1237 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
rs30728305
MGI SNP Detail
Chr12:117498818 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1256 bp downstream
SNP A/C C C A C C C
rs30923311
MGI SNP Detail
Chr12:117498857 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1295 bp downstream
SNP A/G G G A G G G
rs224292966
MGI SNP Detail
Chr12:117498872 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1310 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30679119
MGI SNP Detail
Chr12:117498938 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1376 bp downstream
SNP A/G A A G A A A
rs587176646
MGI SNP Detail
Chr12:117498971 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1409 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs260967459
MGI SNP Detail
Chr12:117498984 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1422 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs30724295
MGI SNP Detail
Chr12:117499093 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1531 bp downstream
SNP A/G A A G A
rs229470831
MGI SNP Detail
Chr12:117499262 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1700 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252612701
MGI SNP Detail
Chr12:117499275 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1713 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs216887022
MGI SNP Detail
Chr12:117499304 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1742 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs235931505
MGI SNP Detail
Chr12:117499497 Gm60307 within coordinates of
Rapgef5 within coordinates of
Tssr115538 1935 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
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Showing SNP(s) 1 - 58 of 58

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory