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Mouse SNP Summary
Symbol
Name
ID 		Tssr115748
transcription start site region 115748
MGI:6043515

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Showing SNP(s) 1 - 66 of 66

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs36927770
MGI SNP Detail		 Chr12:11484627 Tssr115748 1981 bp downstream
Vsnl1 within coordinates of
 SNP G/T T T T T T T T G T
rs248649451
MGI SNP Detail		 Chr12:11484643 Tssr115748 1965 bp downstream
Vsnl1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262274203
MGI SNP Detail		 Chr12:11484666 Tssr115748 1942 bp downstream
Vsnl1 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29194037
MGI SNP Detail		 Chr12:11484695 Tssr115748 1913 bp downstream
Vsnl1 within coordinates of
 SNP A/G G G G A A
rs237043292
MGI SNP Detail		 Chr12:11484716 Tssr115748 1892 bp downstream
Vsnl1 within coordinates of
 SNP C/G/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C T C C C C
rs256668051
MGI SNP Detail		 Chr12:11484831 Tssr115748 1777 bp downstream
Vsnl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs228509578
MGI SNP Detail		 Chr12:11484857 Tssr115748 1751 bp downstream
Vsnl1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248824862
MGI SNP Detail		 Chr12:11485045 Tssr115748 1563 bp downstream
Vsnl1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265523145
MGI SNP Detail		 Chr12:11485084 Tssr115748 1524 bp downstream
Vsnl1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232481906
MGI SNP Detail		 Chr12:11485156 Tssr115748 1452 bp downstream
Vsnl1 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs255455711
MGI SNP Detail		 Chr12:11485400 Rr462902 within coordinates of
Tssr115748 1208 bp downstream
Vsnl1 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A A A A A A
rs583385672
MGI SNP Detail		 Chr12:11485405 Rr462902 within coordinates of
Tssr115748 1203 bp downstream
Vsnl1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230170894
MGI SNP Detail		 Chr12:11485429 Rr462902 within coordinates of
Tssr115748 1179 bp downstream
Vsnl1 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs243284939
MGI SNP Detail		 Chr12:11485463 Rr462902 within coordinates of
Tssr115748 1145 bp downstream
Vsnl1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs216926238
MGI SNP Detail		 Chr12:11485470 Rr462902 within coordinates of
Tssr115748 1138 bp downstream
Vsnl1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235500371
MGI SNP Detail		 Chr12:11485480 Rr462902 within coordinates of
Tssr115748 1128 bp downstream
Vsnl1 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs259048613
MGI SNP Detail		 Chr12:11485508 Rr462902 within coordinates of
Tssr115748 1100 bp downstream
Vsnl1 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223751217
MGI SNP Detail		 Chr12:11485567 Rr462902 within coordinates of
Tssr115748 1041 bp downstream
Vsnl1 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs37699167
MGI SNP Detail		 Chr12:11485655 Rr462903 within coordinates of
Tssr115748 953 bp downstream
Vsnl1 within coordinates of
 SNP A/G G G G G G G G A G
rs261842829
MGI SNP Detail		 Chr12:11485687 Rr462903 within coordinates of
Tssr115748 921 bp downstream
Vsnl1 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29146275
MGI SNP Detail		 Chr12:11485688 Rr462903 within coordinates of
Tssr115748 920 bp downstream
Vsnl1 within coordinates of
 SNP C/T T T C
rs36523600
MGI SNP Detail		 Chr12:11485698 Rr462903 within coordinates of
Tssr115748 910 bp downstream
Vsnl1 within coordinates of
 SNP A/T T T T T T T T T A T
rs256652485
MGI SNP Detail		 Chr12:11485871 Rr462903 within coordinates of
Tssr115748 737 bp downstream
Vsnl1 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs36510519
MGI SNP Detail		 Chr12:11485888 Rr462903 within coordinates of
Tssr115748 720 bp downstream
Vsnl1 within coordinates of
 SNP A/G A A A A A A A A G A
rs37274516
MGI SNP Detail		 Chr12:11485986 Rr462903 within coordinates of
Tssr115748 622 bp downstream
Vsnl1 within coordinates of
 SNP C/T C C C C C C C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs36371826
MGI SNP Detail		 Chr12:11486010 Rr462903 within coordinates of
Tssr115748 598 bp downstream
Vsnl1 within coordinates of
 SNP G/T G G G G G G G G T G
rs37537881
MGI SNP Detail		 Chr12:11486343 Tssr115748 265 bp downstream
Vsnl1 within coordinates of
 SNP A/G A A A G A
rs243205185
MGI SNP Detail		 Chr12:11486533 Cpgi4418 within coordinates of
Tssr115748 75 bp downstream
Tssr3792 within coordinates of
Vsnl1 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265307507
MGI SNP Detail		 Chr12:11486710 Cpgi4418 within coordinates of
Rr462904 within coordinates of
Tssr115748 91 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs223611141
MGI SNP Detail		 Chr12:11486805 Rr462904 within coordinates of
Tssr115748 186 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs243272427
MGI SNP Detail		 Chr12:11486833 Rr462904 within coordinates of
Tssr115748 214 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216916880
MGI SNP Detail		 Chr12:11486849 Rr462904 within coordinates of
Tssr115748 230 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs229499260
MGI SNP Detail		 Chr12:11486891 Rr462904 within coordinates of
Tssr115748 272 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257622656
MGI SNP Detail		 Chr12:11487063 Rr462904 within coordinates of
Tssr115748 444 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs29177101
MGI SNP Detail		 Chr12:11487068 Rr462904 within coordinates of
Tssr115748 449 bp upstream
 SNP A/G A A G G
rs238577862
MGI SNP Detail		 Chr12:11487134 Tssr115748 515 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs256729206
MGI SNP Detail		 Chr12:11487202 Tssr115748 583 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs214128131
MGI SNP Detail		 Chr12:11487253 Tssr115748 634 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs229745443
MGI SNP Detail		 Chr12:11487267 Tssr115748 648 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs250232188
MGI SNP Detail		 Chr12:11487314 Tssr115748 695 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs222524448
MGI SNP Detail		 Chr12:11487347 Tssr115748 728 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs248181000
MGI SNP Detail		 Chr12:11487501 Tssr115748 882 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs262843761
MGI SNP Detail		 Chr12:11487569 Tssr115748 950 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29158280
MGI SNP Detail		 Chr12:11487589 Tssr115748 970 bp upstream
 SNP A/G G G G A A
rs245940613
MGI SNP Detail		 Chr12:11487673 Tssr115748 1054 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs262808629
MGI SNP Detail		 Chr12:11487792 Rr462905 within coordinates of
Tssr115748 1173 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs223601803
MGI SNP Detail		 Chr12:11487818 Rr462905 within coordinates of
Tssr115748 1199 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236847910
MGI SNP Detail		 Chr12:11487836 Rr462905 within coordinates of
Tssr115748 1217 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G A G G G G G G G G G G G G
rs259161102
MGI SNP Detail		 Chr12:11487885 Rr462905 within coordinates of
Tssr115748 1266 bp upstream
 SNP A/G A A A A A A A A A A G A A G A A A A A A A A A A A A
rs587267060
MGI SNP Detail		 Chr12:11487903 Rr462905 within coordinates of
Tssr115748 1284 bp upstream
 SNP A/G G G G G G G G G G G A G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs580814334
MGI SNP Detail		 Chr12:11487912 Rr462905 within coordinates of
Tssr115748 1293 bp upstream
 SNP A/G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G
rs229406106
MGI SNP Detail		 Chr12:11487956 Rr462905 within coordinates of
Tssr115748 1337 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252512356
MGI SNP Detail		 Chr12:11488061 Cpgi4419 within coordinates of
Rr462905 within coordinates of
Tssr115748 1442 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs217501595
MGI SNP Detail		 Chr12:11488105 Cpgi4419 within coordinates of
Rr462905 within coordinates of
Tssr115748 1486 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs230471389
MGI SNP Detail		 Chr12:11488138 Cpgi4419 within coordinates of
Rr462905 within coordinates of
Tssr115748 1519 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs256772695
MGI SNP Detail		 Chr12:11488161 Cpgi4419 within coordinates of
Rr462905 within coordinates of
Tssr115748 1542 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs583376372
MGI SNP Detail		 Chr12:11488208 Cpgi4419 within coordinates of
Rr462905 within coordinates of
Tssr112802 within coordinates of
Tssr115748 1589 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs587024628
MGI SNP Detail		 Chr12:11488212 Cpgi4419 within coordinates of
Rr462905 within coordinates of
Tssr112802 within coordinates of
Tssr115748 1593 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs214068809
MGI SNP Detail		 Chr12:11488346 4930511A02Rik within coordinates of
Rr462906 within coordinates of
Tssr115748 1727 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229699256
MGI SNP Detail		 Chr12:11488371 4930511A02Rik within coordinates of
Rr462906 within coordinates of
Tssr115748 1752 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs250124250
MGI SNP Detail		 Chr12:11488387 4930511A02Rik within coordinates of
Rr462906 within coordinates of
Tssr115748 1768 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs216448012
MGI SNP Detail		 Chr12:11488395 4930511A02Rik within coordinates of
Rr462906 within coordinates of
Tssr115748 1776 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs242790847
MGI SNP Detail		 Chr12:11488398 4930511A02Rik within coordinates of
Rr462906 within coordinates of
Tssr115748 1779 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258485031
MGI SNP Detail		 Chr12:11488401 4930511A02Rik within coordinates of
Rr462906 within coordinates of
Tssr115748 1782 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs225091669
MGI SNP Detail		 Chr12:11488472 4930511A02Rik within coordinates of
Tssr115748 1853 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs243104558
MGI SNP Detail		 Chr12:11488505 4930511A02Rik within coordinates of
Tssr115748 1886 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 66 of 66
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory