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Mouse SNP Summary
Symbol
Name
ID 		Tssr115969
transcription start site region 115969
MGI:6043736

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Showing SNP(s) 1 - 40 of 40

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579386084
MGI SNP Detail		 Chr12:27384993 Sox11 within coordinates of
Tssr115969 1925 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs4222054
MGI SNP Detail		 Chr12:27385061 Sox11 within coordinates of
Tssr115969 1857 bp downstream
 SNP A/G G G G G G G G G G A A A G G G G G G A G G G G G A G G G A G A A G G G G G G A G G G G G G G G G G
rs219897762
MGI SNP Detail		 Chr12:27385077 Sox11 within coordinates of
Tssr115969 1841 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs582694650
MGI SNP Detail		 Chr12:27385148 Sox11 within coordinates of
Tssr115969 1770 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs585089464
MGI SNP Detail		 Chr12:27385158 Sox11 within coordinates of
Tssr115969 1760 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs29157862
MGI SNP Detail		 Chr12:27385164 Sox11 within coordinates of
Tssr115969 1754 bp downstream
 SNP A/C A A A C A
rs29187819
MGI SNP Detail		 Chr12:27385169 Sox11 within coordinates of
Tssr115969 1749 bp downstream
 SNP A/C A A A C A
rs578980724
MGI SNP Detail		 Chr12:27385172 Sox11 within coordinates of
Tssr115969 1746 bp downstream
 SNP A/C C C A C C C C C C A A A A C C C A C A A C C A A C C A C C C C C C A C C C A A C C A C
rs231242720
MGI SNP Detail		 Chr12:27385578 Rr464224 within coordinates of
Sox11 within coordinates of
Tssr115962 within coordinates of
Tssr115969 1340 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs47976139
MGI SNP Detail		 Chr12:27385735 Rr464224 within coordinates of
Sox11 within coordinates of
Tssr115969 1183 bp downstream
 SNP G G G G G G
rs29126071
MGI SNP Detail		 Chr12:27385959 Rr464224 within coordinates of
Sox11 within coordinates of
Tssr115969 959 bp downstream
 SNP A/G A A G G A G
rs251734790
MGI SNP Detail		 Chr12:27385984 Rr464224 within coordinates of
Sox11 within coordinates of
Tssr115969 934 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29180777
MGI SNP Detail		 Chr12:27386191 Sox11 within coordinates of
Tssr115969 727 bp downstream
 SNP G/T T T T G
rs49356346
MGI SNP Detail		 Chr12:27386276 Sox11 within coordinates of
Tssr115969 642 bp downstream
 SNP A/T T T A T
rs29134525
MGI SNP Detail		 Chr12:27386453 Sox11 within coordinates of
Tssr115969 465 bp downstream
 SNP C/T C C C C T
rs13465393
MGI SNP Detail		 Chr12:27386532 Sox11 within coordinates of
Tssr115969 386 bp downstream
 SNP C/T T T T C T T T
rs247419725
MGI SNP Detail		 Chr12:27386611 Sox11 within coordinates of
Tssr115969 307 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585904382
MGI SNP Detail		 Chr12:27386860 Sox11 within coordinates of
Tssr115969 58 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs29145884
MGI SNP Detail		 Chr12:27387101 Rr464225 within coordinates of
Sox11 within coordinates of
Tssr115969 170 bp upstream
 SNP C/T C C T C C C
rs231580544
MGI SNP Detail		 Chr12:27387137 Rr464225 within coordinates of
Sox11 within coordinates of
Tssr115969 206 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260012945
MGI SNP Detail		 Chr12:27387187 Rr464225 within coordinates of
Sox11 within coordinates of
Tssr115969 256 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218034456
MGI SNP Detail		 Chr12:27387242 Rr464225 within coordinates of
Sox11 within coordinates of
Tssr115969 311 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs579761220
MGI SNP Detail		 Chr12:27387297 Sox11 within coordinates of
Tssr115969 366 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29162044
MGI SNP Detail		 Chr12:27387310 Sox11 within coordinates of
Tssr115969 379 bp upstream
 SNP A/T T T A T A T
rs45720449
MGI SNP Detail		 Chr12:27387312 Sox11 within coordinates of
Tssr115969 381 bp upstream
 SNP T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214093299
MGI SNP Detail		 Chr12:27387379 Sox11 within coordinates of
Tssr115969 448 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs13465394
MGI SNP Detail		 Chr12:27387698 Sox11 within coordinates of
Tssr115969 767 bp upstream
 SNP A/G G G A G G G
rs29167952
MGI SNP Detail		 Chr12:27387755 Sox11 within coordinates of
Tssr115969 824 bp upstream
 SNP C/T C C T C C C
rs29484472
MGI SNP Detail		 Chr12:27388259 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1328 bp upstream
 SNP C/T C C C T C C
rs52443040
MGI SNP Detail		 Chr12:27388524 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1593 bp upstream
 SNP A/G A A G
rs585204187
MGI SNP Detail		 Chr12:27388525 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1594 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G
rs579487590
MGI SNP Detail		 Chr12:27388529 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1598 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A G G A A A G A A A A A A A A A A A A G A A A A A A A G G
rs240635821
MGI SNP Detail		 Chr12:27388591 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1660 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263907310
MGI SNP Detail		 Chr12:27388610 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1679 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs221930726
MGI SNP Detail		 Chr12:27388617 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1686 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244511979
MGI SNP Detail		 Chr12:27388663 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1732 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252369160
MGI SNP Detail		 Chr12:27388667 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1736 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219635716
MGI SNP Detail		 Chr12:27388680 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1749 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T
rs241333525
MGI SNP Detail		 Chr12:27388731 Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1800 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29167831
MGI SNP Detail		 Chr12:27388860 Cpgi4506 within coordinates of
Rr464226 within coordinates of
Sox11 within coordinates of
Tssr115969 1929 bp upstream
 SNP A/G A A G A
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Showing SNP(s) 1 - 40 of 40
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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