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Mouse SNP Summary
Symbol
Name
ID 		Tssr116231
transcription start site region 116231
MGI:6043998

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Showing SNP(s) 1 - 51 of 51

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242094334
MGI SNP Detail		 Chr12:49426683 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1924 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254358170
MGI SNP Detail		 Chr12:49426776 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1831 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs232830850
MGI SNP Detail		 Chr12:49426863 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1744 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs259726432
MGI SNP Detail		 Chr12:49426934 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1673 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215704126
MGI SNP Detail		 Chr12:49426960 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1647 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs241001782
MGI SNP Detail		 Chr12:49426981 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1626 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244921528
MGI SNP Detail		 Chr12:49427014 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1593 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs214260463
MGI SNP Detail		 Chr12:49427053 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1554 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240020804
MGI SNP Detail		 Chr12:49427122 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1485 bp downstream
 SNP C/T T C
rs218286665
MGI SNP Detail		 Chr12:49427167 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1440 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs240401655
MGI SNP Detail		 Chr12:49427277 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1330 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262917806
MGI SNP Detail		 Chr12:49427327 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1280 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225379135
MGI SNP Detail		 Chr12:49427511 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1096 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260702729
MGI SNP Detail		 Chr12:49427600 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 1007 bp downstream
 SNP G/T T G
rs237950711
MGI SNP Detail		 Chr12:49427630 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 977 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs250781033
MGI SNP Detail		 Chr12:49427682 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 925 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218185615
MGI SNP Detail		 Chr12:49427751 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 856 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs236947737
MGI SNP Detail		 Chr12:49427756 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 851 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs261832144
MGI SNP Detail		 Chr12:49427777 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 830 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233741289
MGI SNP Detail		 Chr12:49427785 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 822 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs248084202
MGI SNP Detail		 Chr12:49427843 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 764 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265414123
MGI SNP Detail		 Chr12:49427857 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 750 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232379291
MGI SNP Detail		 Chr12:49427968 Gm34304 within coordinates of
Gm56518 within coordinates of
Tssr116231 639 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs244957913
MGI SNP Detail		 Chr12:49428605 Gm34304 within coordinates of
Tssr116231 2 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214348646
MGI SNP Detail		 Chr12:49428742 Rr465759 within coordinates of
Tssr116231 129 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224113198
MGI SNP Detail		 Chr12:49428789 Rr465759 within coordinates of
Tssr116231 176 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221135611
MGI SNP Detail		 Chr12:49429233 Rr465759 within coordinates of
Tssr116231 620 bp upstream
 SNP C/T T C
rs244119170
MGI SNP Detail		 Chr12:49429234 Rr465759 within coordinates of
Tssr116231 621 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218279801
MGI SNP Detail		 Chr12:49429260 Rr465759 within coordinates of
Tssr116231 647 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A
rs243259852
MGI SNP Detail		 Chr12:49429284 Rr465759 within coordinates of
Tssr116231 671 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T
rs258757715
MGI SNP Detail		 Chr12:49429295 Rr465759 within coordinates of
Tssr116231 682 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T T T T T T T T T T T T T
rs217239777
MGI SNP Detail		 Chr12:49429308 Rr465759 within coordinates of
Tssr116231 695 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231779363
MGI SNP Detail		 Chr12:49429459 Rr465759 within coordinates of
Tssr113392 within coordinates of
Tssr116231 846 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250867314
MGI SNP Detail		 Chr12:49429615 Rr465759 within coordinates of
Tssr116231 1002 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A
rs237789774
MGI SNP Detail		 Chr12:49429989 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1376 bp upstream
 SNP A/G A G
rs236975153
MGI SNP Detail		 Chr12:49429991 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1378 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263919168
MGI SNP Detail		 Chr12:49430026 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1413 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225572084
MGI SNP Detail		 Chr12:49430036 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1423 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs580864642
MGI SNP Detail		 Chr12:49430038 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1425 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs250897805
MGI SNP Detail		 Chr12:49430067 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1454 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263028081
MGI SNP Detail		 Chr12:49430092 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1479 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227842412
MGI SNP Detail		 Chr12:49430214 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1601 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238509155
MGI SNP Detail		 Chr12:49430220 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1607 bp upstream
 SNP C/T T T T T T T T C T T T T T T T T C T C C T T T T C T T T T C T T T T T T C T T T T T C C C T C C T
rs258320653
MGI SNP Detail		 Chr12:49430229 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1616 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs224136147
MGI SNP Detail		 Chr12:49430231 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1618 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244202906
MGI SNP Detail		 Chr12:49430260 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1647 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C
rs252280877
MGI SNP Detail		 Chr12:49430341 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1728 bp upstream
 SNP C/T C T
rs217954223
MGI SNP Detail		 Chr12:49430353 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1740 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs234071073
MGI SNP Detail		 Chr12:49430523 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465760 within coordinates of
Tssr116231 1910 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257451791
MGI SNP Detail		 Chr12:49430559 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465761 within coordinates of
Tssr116231 1946 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582728647
MGI SNP Detail		 Chr12:49430577 Cpgi4581 within coordinates of
Foxg1 within coordinates of
Rr465761 within coordinates of
Tssr116231 1964 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
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Showing SNP(s) 1 - 51 of 51
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory