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Mouse SNP Summary
Symbol
Name
ID 		Tssr116881
transcription start site region 116881
MGI:6044648

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582634487
MGI SNP Detail		 Chr12:80305276 Actn1 within coordinates of
Rr468866 within coordinates of
Tssr116881 1994 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253443112
MGI SNP Detail		 Chr12:80305344 Actn1 within coordinates of
Rr468866 within coordinates of
Tssr116881 1926 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6297839
MGI SNP Detail		 Chr12:80305400 Actn1 within coordinates of
Rr468866 within coordinates of
Tssr116881 1870 bp downstream
 SNP C/T T C
rs6298484
MGI SNP Detail		 Chr12:80305531 Actn1 within coordinates of
Rr468866 within coordinates of
Tssr116881 1739 bp downstream
 SNP A/G A G
rs259735992
MGI SNP Detail		 Chr12:80305563 Actn1 within coordinates of
Rr468866 within coordinates of
Tssr116881 1707 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6299101
MGI SNP Detail		 Chr12:80305660 Actn1 within coordinates of
Rr468866 within coordinates of
Tssr116881 1610 bp downstream
 SNP C/T C T
rs215400927
MGI SNP Detail		 Chr12:80305855 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468867 within coordinates of
Tssr116881 1415 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs233080208
MGI SNP Detail		 Chr12:80305865 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468867 within coordinates of
Tssr116881 1405 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs251350329
MGI SNP Detail		 Chr12:80305871 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468867 within coordinates of
Tssr116881 1399 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G G G A G G G G G G G G G G G G
rs218956746
MGI SNP Detail		 Chr12:80306121 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468867 within coordinates of
Tssr116881 1149 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241259065
MGI SNP Detail		 Chr12:80306168 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468867 within coordinates of
Tssr116881 1102 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C C C T C C C C C C C C C C C C
rs264226450
MGI SNP Detail		 Chr12:80306186 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468867 within coordinates of
Tssr116881 1084 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G G G A G G G G G G G G G G G G
rs225725994
MGI SNP Detail		 Chr12:80306690 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468867 within coordinates of
Tssr116881 580 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs248848888
MGI SNP Detail		 Chr12:80306886 Actn1 within coordinates of
Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468869 within coordinates of
Tssr116881 384 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240078103
MGI SNP Detail		 Chr12:80307475 Cpgi4813 within coordinates of
Gm47766 within coordinates of
Rr468869 within coordinates of
Tssr116881 196 bp upstream
 SNP A/T T A
rs225917837
MGI SNP Detail		 Chr12:80307668 Cpgi4813 within coordinates of
Gm47766 within coordinates of
Tssr116881 389 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G A G G G G A G G G G G G G A G G G G
rs585905195
MGI SNP Detail		 Chr12:80307775 Cpgi4813 within coordinates of
Gm47766 within coordinates of
Tssr116881 496 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237307827
MGI SNP Detail		 Chr12:80307792 Cpgi4813 within coordinates of
Gm47766 within coordinates of
Tssr116881 513 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G A G G G G A G G G G G G G G G G G G
rs254418351
MGI SNP Detail		 Chr12:80307878 Gm47766 within coordinates of
Tssr116881 599 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227784765
MGI SNP Detail		 Chr12:80307901 Gm47766 within coordinates of
Tssr116881 622 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C T C C C C T C C C C C C C T C C C C
rs254375631
MGI SNP Detail		 Chr12:80307903 Gm47766 within coordinates of
Tssr116881 624 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs266256880
MGI SNP Detail		 Chr12:80307954 Gm47766 within coordinates of
Tssr116881 675 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C T C C C C T C C C C C C C C C C C C
rs233469666
MGI SNP Detail		 Chr12:80308033 Gm47766 within coordinates of
Tssr116881 754 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C C C T C C C C C C C C C C C C
rs247574548
MGI SNP Detail		 Chr12:80308070 Gm47766 within coordinates of
Tssr116881 791 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215465568
MGI SNP Detail		 Chr12:80308084 Gm47766 within coordinates of
Tssr116881 805 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233173137
MGI SNP Detail		 Chr12:80308098 Gm47766 within coordinates of
Tssr116881 819 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245197676
MGI SNP Detail		 Chr12:80308103 Gm47766 within coordinates of
Tssr116881 824 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs213041258
MGI SNP Detail		 Chr12:80308155 Gm47766 within coordinates of
Tssr116881 876 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs252059563
MGI SNP Detail		 Chr12:80308219 Gm47766 within coordinates of
Tssr116881 940 bp upstream
 SNP C/T C T
rs260944389
MGI SNP Detail		 Chr12:80308287 Gm47766 within coordinates of
Tssr116881 1008 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226231568
MGI SNP Detail		 Chr12:80308300 Gm47766 within coordinates of
Tssr116881 1021 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238672247
MGI SNP Detail		 Chr12:80308314 Gm47766 within coordinates of
Tssr116881 1035 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T G T T T T G T T T T T T T G T T T T
rs251180830
MGI SNP Detail		 Chr12:80308346 Tssr116881 1067 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219975622
MGI SNP Detail		 Chr12:80308360 Tssr116881 1081 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237396379
MGI SNP Detail		 Chr12:80308366 Tssr116881 1087 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254467134
MGI SNP Detail		 Chr12:80308387 Tssr116881 1108 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220097420
MGI SNP Detail		 Chr12:80308404 Tssr116881 1125 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250834034
MGI SNP Detail		 Chr12:80308508 Tssr116881 1229 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263873367
MGI SNP Detail		 Chr12:80308541 Tssr116881 1262 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232670866
MGI SNP Detail		 Chr12:80308561 Tssr116881 1282 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A G A A A A G A A A A A A A G A A A A
rs247638301
MGI SNP Detail		 Chr12:80308564 Tssr116881 1285 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T G T T T T G T T T T T T T T T T T T
rs259480621
MGI SNP Detail		 Chr12:80308634 Tssr116881 1355 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226872085
MGI SNP Detail		 Chr12:80308703 Tssr116881 1424 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245254305
MGI SNP Detail		 Chr12:80308716 Tssr116881 1437 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A A A C A A A A A A A C A A A A
rs213531555
MGI SNP Detail		 Chr12:80308731 Tssr116881 1452 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A G A A A A G A A A A A A A G A A A A
rs212543711
MGI SNP Detail		 Chr12:80308760 Tssr116881 1481 bp upstream
 SNP A/G G A
rs50771148
MGI SNP Detail		 Chr12:80308761 Tssr116881 1482 bp upstream
 SNP A/G A G A
rs260348298
MGI SNP Detail		 Chr12:80308801 Tssr116881 1522 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C A C C C C A C C C C C C C C C C C C
rs218169403
MGI SNP Detail		 Chr12:80308854 Tssr116881 1575 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G G G A G G G G G G G A G G G G
rs233623768
MGI SNP Detail		 Chr12:80308861 Tssr116881 1582 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G T G G G G T G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251239118
MGI SNP Detail		 Chr12:80308936 Tssr116881 1657 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C G C C C C G C C C C C C C C C C C C
rs220014984
MGI SNP Detail		 Chr12:80308939 Tssr116881 1660 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs231352713
MGI SNP Detail		 Chr12:80308940 Tssr116881 1661 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs248799383
MGI SNP Detail		 Chr12:80308976 Tssr116881 1697 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219891455
MGI SNP Detail		 Chr12:80309051 Tssr116881 1772 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs580058749
MGI SNP Detail		 Chr12:80309058 Tssr116881 1779 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs248143378
MGI SNP Detail		 Chr12:80309081 Tssr116881 1802 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265858687
MGI SNP Detail		 Chr12:80309174 Tssr116881 1895 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs49361246
MGI SNP Detail		 Chr12:80309233 Tssr116881 1954 bp upstream
 SNP A/C C C C C C C C C C C A C C A C
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory