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Mouse SNP Summary
Symbol
Name
ID 		Tssr116991
transcription start site region 116991
MGI:6044758

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Showing SNP(s) 1 - 55 of 55

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234862333
MGI SNP Detail		 Chr12:84239076 Mideas within coordinates of
Tssr116991 1705 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs251558103
MGI SNP Detail		 Chr12:84239117 Mideas within coordinates of
Tssr116991 1664 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221718059
MGI SNP Detail		 Chr12:84239206 Mideas within coordinates of
Tssr116991 1575 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231648200
MGI SNP Detail		 Chr12:84239304 Mideas within coordinates of
Tssr116991 1477 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs262584541
MGI SNP Detail		 Chr12:84239441 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 1340 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220809187
MGI SNP Detail		 Chr12:84239505 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 1276 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245169174
MGI SNP Detail		 Chr12:84239855 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 926 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs260414677
MGI SNP Detail		 Chr12:84239880 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 901 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs223516666
MGI SNP Detail		 Chr12:84239959 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 822 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs240637439
MGI SNP Detail		 Chr12:84240042 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 739 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259049277
MGI SNP Detail		 Chr12:84240048 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 733 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs228100771
MGI SNP Detail		 Chr12:84240051 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 730 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G G A A A A G A A A A G A A A A A A G A A A A A A A G A A G A
rs243128994
MGI SNP Detail		 Chr12:84240097 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 684 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs265245116
MGI SNP Detail		 Chr12:84240159 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 622 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G
rs227512776
MGI SNP Detail		 Chr12:84240454 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116991 327 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253672077
MGI SNP Detail		 Chr12:84240554 Cpgi4863 within coordinates of
Mideas within coordinates of
Tssr116987 within coordinates of
Tssr116991 227 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs216500513
MGI SNP Detail		 Chr12:84240932 Cpgi4863 within coordinates of
Gm31513 within coordinates of
Mideas within coordinates of
Rr403405 within coordinates of
Tssr116991 91 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs584261365
MGI SNP Detail		 Chr12:84241136 Cpgi4863 within coordinates of
Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 295 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs235712144
MGI SNP Detail		 Chr12:84241196 Cpgi4863 within coordinates of
Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 355 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263846958
MGI SNP Detail		 Chr12:84241331 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 490 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs223650203
MGI SNP Detail		 Chr12:84241362 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 521 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240581705
MGI SNP Detail		 Chr12:84241377 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 536 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253647813
MGI SNP Detail		 Chr12:84241384 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 543 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs219655336
MGI SNP Detail		 Chr12:84241408 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 567 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245880511
MGI SNP Detail		 Chr12:84241553 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 712 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262770015
MGI SNP Detail		 Chr12:84241685 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 844 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227977360
MGI SNP Detail		 Chr12:84241687 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 846 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs242098264
MGI SNP Detail		 Chr12:84241727 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 886 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs258695452
MGI SNP Detail		 Chr12:84241729 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 888 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs228994873
MGI SNP Detail		 Chr12:84241734 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 893 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs245083987
MGI SNP Detail		 Chr12:84241780 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 939 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs215588951
MGI SNP Detail		 Chr12:84241890 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1049 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229456090
MGI SNP Detail		 Chr12:84241955 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1114 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256708104
MGI SNP Detail		 Chr12:84241971 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1130 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212441013
MGI SNP Detail		 Chr12:84241994 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1153 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237456180
MGI SNP Detail		 Chr12:84242103 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1262 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254748517
MGI SNP Detail		 Chr12:84242130 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1289 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs217704750
MGI SNP Detail		 Chr12:84242193 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1352 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234114052
MGI SNP Detail		 Chr12:84242300 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1459 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253774038
MGI SNP Detail		 Chr12:84242309 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1468 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs219598681
MGI SNP Detail		 Chr12:84242320 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1479 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237116141
MGI SNP Detail		 Chr12:84242504 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1663 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G A A A A A A A G A A A A A A A A A A A A A A A A A A G A A G A
rs579322611
MGI SNP Detail		 Chr12:84242522 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1681 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262436106
MGI SNP Detail		 Chr12:84242528 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1687 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A G A A A A A A A G A A A A A A A A A A A A A A A A A A A A G A
rs581474577
MGI SNP Detail		 Chr12:84242542 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1701 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs220419300
MGI SNP Detail		 Chr12:84242649 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1808 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs245015555
MGI SNP Detail		 Chr12:84242662 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1821 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T C T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
rs258810027
MGI SNP Detail		 Chr12:84242716 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1875 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584601584
MGI SNP Detail		 Chr12:84242742 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1901 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs579000715
MGI SNP Detail		 Chr12:84242744 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1903 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222556327
MGI SNP Detail		 Chr12:84242782 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1941 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs238938968
MGI SNP Detail		 Chr12:84242783 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1942 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs257898165
MGI SNP Detail		 Chr12:84242801 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1960 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs229795992
MGI SNP Detail		 Chr12:84242831 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1990 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A G A A G A
rs264745988
MGI SNP Detail		 Chr12:84242836 Gm31513 within coordinates of
Mideas within coordinates of
Tssr116991 1995 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 55 of 55
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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