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Mouse SNP Summary
Symbol
Name
ID 		Tssr117911
transcription start site region 117911
MGI:6045678

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223079849
MGI SNP Detail		 Chr12:112790731 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1914 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs241310352
MGI SNP Detail		 Chr12:112790829 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1816 bp downstream
 SNP C/T T T T T C T T T T T C C T T T T T T T C C C T T T C T T T C T T T T T T T T T C T T T T T T T T T C C T T
rs264870986
MGI SNP Detail		 Chr12:112791050 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1595 bp downstream
 SNP C/T T T T C T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs225960695
MGI SNP Detail		 Chr12:112791060 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1585 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212081322
MGI SNP Detail		 Chr12:112791195 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1450 bp downstream
 SNP C/T T C
rs259292177
MGI SNP Detail		 Chr12:112791242 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1403 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235039335
MGI SNP Detail		 Chr12:112791272 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1373 bp downstream
 SNP C/G C G
rs245239472
MGI SNP Detail		 Chr12:112791288 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1357 bp downstream
 SNP G/T T T T T G T T T T T G G T T T T T T T G G G T T T G T T T G T T T T T T T T T G T T T T T T T T T G G T T
rs254035144
MGI SNP Detail		 Chr12:112791326 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1319 bp downstream
 SNP C/G C G
rs228688226
MGI SNP Detail		 Chr12:112791415 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1230 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248862804
MGI SNP Detail		 Chr12:112791416 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1229 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs51393012
MGI SNP Detail		 Chr12:112791428 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1217 bp downstream
 SNP A/G A G G
rs49726758
MGI SNP Detail		 Chr12:112791440 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1205 bp downstream
 SNP G/T T T G
rs247252110
MGI SNP Detail		 Chr12:112791475 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1170 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214953205
MGI SNP Detail		 Chr12:112791476 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1169 bp downstream
 SNP A/G G G G G A G G G G G A A G G G G G G G A A A G G G A G G G A G G G G G G G G G A G G G G G G G G A A A G G
rs250668316
MGI SNP Detail		 Chr12:112791501 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1144 bp downstream
 SNP C/T C T
rs213877962
MGI SNP Detail		 Chr12:112791503 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1142 bp downstream
 SNP C C C
rs223392813
MGI SNP Detail		 Chr12:112791547 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1098 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs236142781
MGI SNP Detail		 Chr12:112791583 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1062 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs230991144
MGI SNP Detail		 Chr12:112791594 Cdca4 within coordinates of
Rr265126 within coordinates of
Tssr117911 1051 bp downstream
 SNP C C C
rs248504070
MGI SNP Detail		 Chr12:112791719 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 926 bp downstream
 SNP G/T T G
rs227209183
MGI SNP Detail		 Chr12:112791725 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 920 bp downstream
 SNP A/T A T
rs253054607
MGI SNP Detail		 Chr12:112791844 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 801 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222017130
MGI SNP Detail		 Chr12:112791957 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 688 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29198175
MGI SNP Detail		 Chr12:112791984 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 661 bp downstream
 SNP G/T G T G G T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29133295
MGI SNP Detail		 Chr12:112792119 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 526 bp downstream
 SNP C/G C G C C G G
rs228006369
MGI SNP Detail		 Chr12:112792256 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 389 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs245511762
MGI SNP Detail		 Chr12:112792285 Cdca4 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Tssr117911 360 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224782517
MGI SNP Detail		 Chr12:112792692 Cdca4 within coordinates of
Cpgi5185 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 within coordinates of
 SNP A/G A G
rs29168015
MGI SNP Detail		 Chr12:112792712 Cdca4 within coordinates of
Cpgi5185 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 within coordinates of
 SNP A/G G A
rs29147496
MGI SNP Detail		 Chr12:112792834 Cdca4 within coordinates of
Cpgi5185 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 108 bp upstream
 SNP A/C A C A C A
rs214992694
MGI SNP Detail		 Chr12:112792858 Cdca4 within coordinates of
Cpgi5185 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 132 bp upstream
 SNP A/G G G G G A G G G G G A G G G G G G G A A A G G G A G G G G G G G G G G G G A G G G G G G G G G A A G G
rs227326430
MGI SNP Detail		 Chr12:112792866 Cdca4 within coordinates of
Cpgi5185 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 140 bp upstream
 SNP G/T T T T T G T T T T T G G T T T T T T T G G G T T T G T T T T T T T T T T T T G T T T T T T T T T G G T T
rs29125403
MGI SNP Detail		 Chr12:112792902 Cdca4 within coordinates of
Cpgi5185 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 176 bp upstream
 SNP A/G G A G A A
rs29185377
MGI SNP Detail		 Chr12:112793095 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 369 bp upstream
Tssr3960 within coordinates of
 SNP A/G A G G
rs234541089
MGI SNP Detail		 Chr12:112793270 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 544 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261560638
MGI SNP Detail		 Chr12:112793309 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 583 bp upstream
 SNP A/C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C A C C C C
rs217941453
MGI SNP Detail		 Chr12:112793316 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 590 bp upstream
 SNP A/C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C T C C C C
rs236484656
MGI SNP Detail		 Chr12:112793322 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 596 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs252872843
MGI SNP Detail		 Chr12:112793338 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 612 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586280497
MGI SNP Detail		 Chr12:112793339 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 613 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T
rs222050051
MGI SNP Detail		 Chr12:112793344 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 618 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G T G T G T G G G G G G G G G T G G G G T G G T T T T
rs239125277
MGI SNP Detail		 Chr12:112793345 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 619 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C T C T C C C C C C C C C T C C C C T C C T T T T
rs258024072
MGI SNP Detail		 Chr12:112793372 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 646 bp upstream
 SNP A/G A G G A A A A A G G A A A A A A A G G G G A A A A A A A A A A A A G G G G A A A A A A A G A A A A
rs219444631
MGI SNP Detail		 Chr12:112793394 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 668 bp upstream
 SNP A/T T A
rs387090495
MGI SNP Detail		 Chr12:112793437 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 711 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T C T C C C C C C C C C C C C C C C C C C C T T C C
rs50204487
MGI SNP Detail		 Chr12:112793586 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 860 bp upstream
 SNP A/G A G A G G
rs47258970
MGI SNP Detail		 Chr12:112793713 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 987 bp upstream
 SNP A/C A C A C C
rs48837643
MGI SNP Detail		 Chr12:112793735 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 1009 bp upstream
 SNP A/T A T A T A
rs48780783
MGI SNP Detail		 Chr12:112793766 Cpgi5185 within coordinates of
Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 1040 bp upstream
 SNP A/T A T A T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582866151
MGI SNP Detail		 Chr12:112793833 Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 1107 bp upstream
 SNP A/C A A A C A A A A A A A A A A A A A A A A A A A A A C A C A C C A A A A A C C C A A A A A A C A C C C C C C
rs263588613
MGI SNP Detail		 Chr12:112793889 Gm52009 within coordinates of
Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 1163 bp upstream
 SNP T T T
rs227266567
MGI SNP Detail		 Chr12:112793928 Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 1202 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51955226
MGI SNP Detail		 Chr12:112793940 Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 1214 bp upstream
 SNP A/T T A A A
rs46617366
MGI SNP Detail		 Chr12:112793946 Gm56552 within coordinates of
Rr265126 within coordinates of
Rr387795 within coordinates of
Tssr117911 1220 bp upstream
 SNP G/T T G G G
rs228029278
MGI SNP Detail		 Chr12:112793955 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1229 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs249740403
MGI SNP Detail		 Chr12:112793979 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1253 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216676783
MGI SNP Detail		 Chr12:112794005 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1279 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236309502
MGI SNP Detail		 Chr12:112794050 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1324 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs46959544
MGI SNP Detail		 Chr12:112794065 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1339 bp upstream
 SNP A/G G A
rs49612453
MGI SNP Detail		 Chr12:112794066 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1340 bp upstream
 SNP C/T T C
rs216023228
MGI SNP Detail		 Chr12:112794124 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1398 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs45817464
MGI SNP Detail		 Chr12:112794297 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1571 bp upstream
 SNP A/G G A A A
rs46990972
MGI SNP Detail		 Chr12:112794310 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1584 bp upstream
 SNP C/T T C C C
rs49952072
MGI SNP Detail		 Chr12:112794343 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1617 bp upstream
 SNP C/T T C C C
rs47160407
MGI SNP Detail		 Chr12:112794409 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1683 bp upstream
 SNP C/T T C C C
rs50953971
MGI SNP Detail		 Chr12:112794479 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1753 bp upstream
 SNP A/G G A A A
rs387391764
MGI SNP Detail		 Chr12:112794503 Gm56552 within coordinates of
Rr265126 within coordinates of
Tssr117911 1777 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G A A G G
rs29160848
MGI SNP Detail		 Chr12:112794664 Gm56552 within coordinates of
Tssr117911 1938 bp upstream
 SNP C/T C C T C
rs387026451
MGI SNP Detail		 Chr12:112794687 Gm56552 within coordinates of
Tssr117911 1961 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G T T G G
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Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory