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Mouse SNP Summary
Symbol
Name
ID 		Tssr119463
transcription start site region 119463
MGI:6047230

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Showing SNP(s) 1 - 46 of 46

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223385055
MGI SNP Detail		 Chr13:42861131 Phactr1 within coordinates of
Tssr119463 1995 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C C C C C C C C C C C C C C
rs244506987
MGI SNP Detail		 Chr13:42861259 Phactr1 within coordinates of
Tssr119463 1867 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs213634665
MGI SNP Detail		 Chr13:42861346 Phactr1 within coordinates of
Tssr119463 1780 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231457578
MGI SNP Detail		 Chr13:42861548 Phactr1 within coordinates of
Tssr119463 1578 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253216911
MGI SNP Detail		 Chr13:42861554 Phactr1 within coordinates of
Tssr119463 1572 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46158933
MGI SNP Detail		 Chr13:42861727 Phactr1 within coordinates of
Tssr119463 1399 bp upstream
 SNP C/T C C C C C C T C C C T C C C
rs240492206
MGI SNP Detail		 Chr13:42861728 Phactr1 within coordinates of
Tssr119463 1398 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs48049628
MGI SNP Detail		 Chr13:42861761 Phactr1 within coordinates of
Tssr119463 1365 bp upstream
 SNP G/T T T T T T T G T T T G T T G T
rs47464870
MGI SNP Detail		 Chr13:42861862 Phactr1 within coordinates of
Tssr119463 1264 bp upstream
 SNP A/G G G G G G G G G G G G G G A G
rs50381659
MGI SNP Detail		 Chr13:42861964 Phactr1 within coordinates of
Tssr119463 1162 bp upstream
 SNP A/C C C C C C C C C C C C C C C A
rs47324349
MGI SNP Detail		 Chr13:42862097 Phactr1 within coordinates of
Tssr119463 1029 bp upstream
 SNP A/G G G G G G G A G G G A G G A G
rs252382579
MGI SNP Detail		 Chr13:42862243 Phactr1 within coordinates of
Tssr119463 883 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs219872975
MGI SNP Detail		 Chr13:42862317 Phactr1 within coordinates of
Tssr119463 809 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs46519920
MGI SNP Detail		 Chr13:42862350 Phactr1 within coordinates of
Tssr119463 776 bp upstream
 SNP A/G G G G G G G A G G G A G G G G
rs258320248
MGI SNP Detail		 Chr13:42862365 Phactr1 within coordinates of
Tssr119463 761 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs49317115
MGI SNP Detail		 Chr13:42862497 Phactr1 within coordinates of
Tssr119463 629 bp upstream
 SNP C/T T T T T T T C T T T C T T C C
rs46894883
MGI SNP Detail		 Chr13:42862677 Phactr1 within coordinates of
Rr478185 within coordinates of
Tssr119463 449 bp upstream
 SNP A/G G G G G G G G G G G G G G G A
rs254440194
MGI SNP Detail		 Chr13:42862693 Phactr1 within coordinates of
Rr478185 within coordinates of
Tssr119463 433 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50094533
MGI SNP Detail		 Chr13:42862730 Phactr1 within coordinates of
Rr478185 within coordinates of
Tssr119463 396 bp upstream
 SNP A/G G G G G G G G G G G G G G A G
rs223351676
MGI SNP Detail		 Chr13:42862849 Phactr1 within coordinates of
Rr478185 within coordinates of
Tssr119463 277 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238280341
MGI SNP Detail		 Chr13:42862858 Phactr1 within coordinates of
Rr478185 within coordinates of
Tssr119463 268 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255279954
MGI SNP Detail		 Chr13:42862957 Phactr1 within coordinates of
Rr478185 within coordinates of
Tssr119463 169 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs51101952
MGI SNP Detail		 Chr13:42863655 Cpgi5506 within coordinates of
Phactr1 within coordinates of
Tssr119463 440 bp downstream
 SNP C/T C C C C C C T C C C T C C T C
rs257271288
MGI SNP Detail		 Chr13:42863981 Phactr1 within coordinates of
Tssr119463 766 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs215770324
MGI SNP Detail		 Chr13:42864118 Phactr1 within coordinates of
Tssr119463 903 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235058617
MGI SNP Detail		 Chr13:42864249 Phactr1 within coordinates of
Tssr119463 1034 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254053966
MGI SNP Detail		 Chr13:42864322 Phactr1 within coordinates of
Tssr119463 1107 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C C C C C C A C C A C C A A
rs213076289
MGI SNP Detail		 Chr13:42864327 Phactr1 within coordinates of
Tssr119463 1112 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230064571
MGI SNP Detail		 Chr13:42864347 Phactr1 within coordinates of
Tssr119463 1132 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs252303347
MGI SNP Detail		 Chr13:42864435 Phactr1 within coordinates of
Tssr119463 1220 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213955074
MGI SNP Detail		 Chr13:42864440 Phactr1 within coordinates of
Tssr119463 1225 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585972449
MGI SNP Detail		 Chr13:42864518 Phactr1 within coordinates of
Tssr119463 1303 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239056597
MGI SNP Detail		 Chr13:42864599 Phactr1 within coordinates of
Tssr119463 1384 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263108797
MGI SNP Detail		 Chr13:42864603 Phactr1 within coordinates of
Tssr119463 1388 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226255353
MGI SNP Detail		 Chr13:42864752 Phactr1 within coordinates of
Tssr119463 1537 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs584005585
MGI SNP Detail		 Chr13:42864760 Phactr1 within coordinates of
Tssr119463 1545 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs249767117
MGI SNP Detail		 Chr13:42864765 Phactr1 within coordinates of
Tssr119463 1550 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A A A A A A G A A G A A G G
rs248670246
MGI SNP Detail		 Chr13:42864808 Phactr1 within coordinates of
Tssr119463 1593 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217747928
MGI SNP Detail		 Chr13:42864890 Phactr1 within coordinates of
Tssr119463 1675 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs238194288
MGI SNP Detail		 Chr13:42865020 Phactr1 within coordinates of
Tssr119463 1805 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255230348
MGI SNP Detail		 Chr13:42865061 Phactr1 within coordinates of
Tssr119463 1846 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232939041
MGI SNP Detail		 Chr13:42865122 Phactr1 within coordinates of
Rr478187 within coordinates of
Tssr119463 1907 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245153167
MGI SNP Detail		 Chr13:42865143 Phactr1 within coordinates of
Rr478187 within coordinates of
Tssr119463 1928 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266136877
MGI SNP Detail		 Chr13:42865169 Phactr1 within coordinates of
Rr478187 within coordinates of
Tssr119463 1954 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233916581
MGI SNP Detail		 Chr13:42865189 Phactr1 within coordinates of
Rr478187 within coordinates of
Tssr119463 1974 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs259232632
MGI SNP Detail		 Chr13:42865192 Phactr1 within coordinates of
Rr478187 within coordinates of
Tssr119463 1977 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C C
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Showing SNP(s) 1 - 46 of 46
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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