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Mouse SNP Summary
Symbol
Name
ID 		Tssr119539
transcription start site region 119539
MGI:6047306

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Showing SNP(s) 1 - 26 of 26

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227696671
MGI SNP Detail		 Chr13:44882103 Tssr119539 1967 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243755525
MGI SNP Detail		 Chr13:44882391 Gm60383 within coordinates of
Tssr119539 1679 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs264992902
MGI SNP Detail		 Chr13:44882643 Gm60383 within coordinates of
Tssr119539 1427 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G G G G G G G G G A G G G G
rs227894008
MGI SNP Detail		 Chr13:44882782 Gm60383 within coordinates of
Rr478586 within coordinates of
Tssr119539 1288 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246287373
MGI SNP Detail		 Chr13:44882792 Gm60383 within coordinates of
Rr478586 within coordinates of
Tssr119539 1278 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G G G G G G G G G G G G G G
rs230785697
MGI SNP Detail		 Chr13:44882960 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 1110 bp upstream
 SNP C/T T C
rs581401060
MGI SNP Detail		 Chr13:44882967 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 1103 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229476835
MGI SNP Detail		 Chr13:44883340 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 730 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259581613
MGI SNP Detail		 Chr13:44883355 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 715 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213246366
MGI SNP Detail		 Chr13:44883389 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 681 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236301902
MGI SNP Detail		 Chr13:44883476 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 594 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251570433
MGI SNP Detail		 Chr13:44883486 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 584 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs214327553
MGI SNP Detail		 Chr13:44883565 Cpgi5525 within coordinates of
Gm60383 within coordinates of
Jarid2 within coordinates of
Rr478586 within coordinates of
Tssr119539 505 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs233722992
MGI SNP Detail		 Chr13:44883642 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr478587 within coordinates of
Tssr119539 428 bp upstream
 SNP A/G A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A A A A A A A A A G A A A A
rs251397850
MGI SNP Detail		 Chr13:44883826 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr478587 within coordinates of
Tssr119539 244 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs222514436
MGI SNP Detail		 Chr13:44883828 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr478587 within coordinates of
Tssr119539 242 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs234188524
MGI SNP Detail		 Chr13:44884428 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr478587 within coordinates of
Tssr119539 354 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs46510055
MGI SNP Detail		 Chr13:44884443 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr478587 within coordinates of
Tssr119539 369 bp downstream
 SNP A A
rs47020385
MGI SNP Detail		 Chr13:44884475 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr478587 within coordinates of
Tssr119539 401 bp downstream
 SNP T T
rs220351552
MGI SNP Detail		 Chr13:44884648 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr403743 within coordinates of
Rr478587 within coordinates of
Tssr119539 574 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246885068
MGI SNP Detail		 Chr13:44884682 Cpgi5525 within coordinates of
Jarid2 within coordinates of
Rr403743 within coordinates of
Rr478587 within coordinates of
Rr478588 within coordinates of
Tssr119539 608 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262198694
MGI SNP Detail		 Chr13:44885079 Jarid2 within coordinates of
Tssr119539 1005 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs221529813
MGI SNP Detail		 Chr13:44885433 Jarid2 within coordinates of
Tssr119539 1359 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs240252525
MGI SNP Detail		 Chr13:44885600 Jarid2 within coordinates of
Tssr119539 1526 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261102873
MGI SNP Detail		 Chr13:44885891 Jarid2 within coordinates of
Tssr119539 1817 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242388573
MGI SNP Detail		 Chr13:44886031 Jarid2 within coordinates of
Tssr119539 1957 bp downstream
 SNP C/T T C
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Showing SNP(s) 1 - 26 of 26
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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