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Mouse SNP Summary
Symbol
Name
ID 		Tssr120528
transcription start site region 120528
MGI:6048295

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Showing SNP(s) 1 - 45 of 45

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254238232
MGI SNP Detail		 Chr13:83875765 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483281 within coordinates of
Tssr120528 1829 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T T
rs47391798
MGI SNP Detail		 Chr13:83875841 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483281 within coordinates of
Tssr120528 1753 bp upstream
 SNP G/T G G G G G G G G G G G G G T G
rs239115859
MGI SNP Detail		 Chr13:83875861 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483281 within coordinates of
Tssr120528 1733 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs50040572
MGI SNP Detail		 Chr13:83875882 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483281 within coordinates of
Tssr120528 1712 bp upstream
 SNP A/C A A A A A A A C A A A C C A A C A
rs216316673
MGI SNP Detail		 Chr13:83875990 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483281 within coordinates of
Tssr120528 1604 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs235785464
MGI SNP Detail		 Chr13:83876252 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1342 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255537057
MGI SNP Detail		 Chr13:83876451 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1143 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226832810
MGI SNP Detail		 Chr13:83876565 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1029 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs240909698
MGI SNP Detail		 Chr13:83876584 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1010 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261404699
MGI SNP Detail		 Chr13:83876813 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 781 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs222264528
MGI SNP Detail		 Chr13:83876847 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 747 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238090020
MGI SNP Detail		 Chr13:83876939 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 655 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs47812653
MGI SNP Detail		 Chr13:83876961 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 633 bp upstream
 SNP C/G G C G C G G G G G G G C G G G
rs227562616
MGI SNP Detail		 Chr13:83877162 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483282 within coordinates of
Tssr120528 432 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585954173
MGI SNP Detail		 Chr13:83877278 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483282 within coordinates of
Tssr120528 316 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs240677114
MGI SNP Detail		 Chr13:83877314 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483282 within coordinates of
Tssr120528 280 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs259742832
MGI SNP Detail		 Chr13:83877376 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483282 within coordinates of
Tssr120528 218 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228055722
MGI SNP Detail		 Chr13:83877943 Cpgi5906 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483284 within coordinates of
Tssr120528 330 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs250062001
MGI SNP Detail		 Chr13:83878000 Cpgi5906 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483284 within coordinates of
Tssr120528 387 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214449433
MGI SNP Detail		 Chr13:83878044 Cpgi5906 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483284 within coordinates of
Tssr120528 431 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580064416
MGI SNP Detail		 Chr13:83878133 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483284 within coordinates of
Tssr120528 520 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29247917
MGI SNP Detail		 Chr13:83878320 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483284 within coordinates of
Tssr120528 707 bp downstream
 SNP A/T T A T T
rs230947669
MGI SNP Detail		 Chr13:83878370 Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 757 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs246587344
MGI SNP Detail		 Chr13:83878673 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1060 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216255888
MGI SNP Detail		 Chr13:83878694 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1081 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235955221
MGI SNP Detail		 Chr13:83878724 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1111 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs255477736
MGI SNP Detail		 Chr13:83878731 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1118 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212287312
MGI SNP Detail		 Chr13:83878752 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1139 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237497123
MGI SNP Detail		 Chr13:83878773 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1160 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256032600
MGI SNP Detail		 Chr13:83878789 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1176 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221859828
MGI SNP Detail		 Chr13:83878803 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1190 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C
rs231811927
MGI SNP Detail		 Chr13:83878804 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1191 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs250943414
MGI SNP Detail		 Chr13:83878816 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1203 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs221389009
MGI SNP Detail		 Chr13:83879036 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1423 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs240812160
MGI SNP Detail		 Chr13:83879071 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1458 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs266143432
MGI SNP Detail		 Chr13:83879088 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1475 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs220204311
MGI SNP Detail		 Chr13:83879156 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1543 bp downstream
 SNP A/C C A C C A A C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C A C C A A A C C A C C C
rs244920284
MGI SNP Detail		 Chr13:83879162 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1549 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262447583
MGI SNP Detail		 Chr13:83879243 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Tssr120528 1630 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs264909598
MGI SNP Detail		 Chr13:83879330 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483286 within coordinates of
Tssr120528 1717 bp downstream
 SNP C/G C G
rs246513168
MGI SNP Detail		 Chr13:83879345 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483286 within coordinates of
Tssr120528 1732 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259999030
MGI SNP Detail		 Chr13:83879442 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483286 within coordinates of
Tssr120528 1829 bp downstream
 SNP C/T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs228612692
MGI SNP Detail		 Chr13:83879495 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483286 within coordinates of
Tssr120528 1882 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249159458
MGI SNP Detail		 Chr13:83879535 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483286 within coordinates of
Tssr120528 1922 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C A C C C C C C A C C C C C C C C C C C C
rs212768853
MGI SNP Detail		 Chr13:83879582 Cpgi5907 within coordinates of
Gm55122 within coordinates of
Mir9-2hg within coordinates of
Rr483286 within coordinates of
Tssr120528 1969 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 45 of 45
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory