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Mouse SNP Summary
Symbol
Name
ID
Tssr121731
transcription start site region 121731
MGI:6049498

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263363339
MGI SNP Detail
Chr13:23804093 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1880 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs224203383
MGI SNP Detail
Chr13:23804106 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1867 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239662775
MGI SNP Detail
Chr13:23804133 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1840 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257429926
MGI SNP Detail
Chr13:23804225 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1748 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs218715256
MGI SNP Detail
Chr13:23804227 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1746 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237448527
MGI SNP Detail
Chr13:23804251 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1722 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29785978
MGI SNP Detail
Chr13:23804261 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1712 bp downstream
SNP A/G A A A A G A G A A G A G G A G G A
rs234198222
MGI SNP Detail
Chr13:23804262 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1711 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G
rs253222069
MGI SNP Detail
Chr13:23804290 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1683 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs265514612
MGI SNP Detail
Chr13:23804378 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1595 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs231283286
MGI SNP Detail
Chr13:23804394 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1579 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs244135514
MGI SNP Detail
Chr13:23804541 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1432 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213178735
MGI SNP Detail
Chr13:23804543 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1430 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs582532454
MGI SNP Detail
Chr13:23804598 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1375 bp downstream
SNP A/C C C C C C C C C A C C C C C C C A A C A C C C C C C C C A C C A C A A C A C C C C C C C C C C C C C C
rs586325703
MGI SNP Detail
Chr13:23804631 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1342 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230234478
MGI SNP Detail
Chr13:23804661 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1312 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242144087
MGI SNP Detail
Chr13:23804699 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1274 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs218835592
MGI SNP Detail
Chr13:23804706 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1267 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs29785981
MGI SNP Detail
Chr13:23804707 H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1266 bp downstream
SNP C/T C C C C T C T C C T C T T C T T C
rs259119893
MGI SNP Detail
Chr13:23804714 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1259 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29786914
MGI SNP Detail
Chr13:23804807 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1166 bp downstream
SNP C/T C C C C C C T C C C C C C T C
rs232812602
MGI SNP Detail
Chr13:23804827 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1146 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251187577
MGI SNP Detail
Chr13:23804829 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1144 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218799974
MGI SNP Detail
Chr13:23804839 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1134 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237047443
MGI SNP Detail
Chr13:23804840 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1133 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264334609
MGI SNP Detail
Chr13:23804861 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1112 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225972516
MGI SNP Detail
Chr13:23804864 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1109 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs249299704
MGI SNP Detail
Chr13:23804889 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1084 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263218227
MGI SNP Detail
Chr13:23804912 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1061 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs226115065
MGI SNP Detail
Chr13:23804930 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 1043 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237996576
MGI SNP Detail
Chr13:23804999 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 974 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254963876
MGI SNP Detail
Chr13:23805032 Gm11398 within coordinates of
H2bc6 within coordinates of
Rr475906 within coordinates of
Tssr121731 941 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs223751864
MGI SNP Detail
Chr13:23805056 H2bc6 within coordinates of
Rr403657 within coordinates of
Rr475906 within coordinates of
Tssr121731 917 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs254990908
MGI SNP Detail
Chr13:23805059 H2bc6 within coordinates of
Rr403657 within coordinates of
Rr475906 within coordinates of
Tssr121731 914 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs218414882
MGI SNP Detail
Chr13:23805061 H2bc6 within coordinates of
Rr403657 within coordinates of
Rr475906 within coordinates of
Tssr121731 912 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29786917
MGI SNP Detail
Chr13:23805189 Rr403657 within coordinates of
Rr475907 within coordinates of
Tssr121731 784 bp downstream
SNP A/G G G G G G G G G G G G G G A G
rs29786920
MGI SNP Detail
Chr13:23805265 Cpgi5367 within coordinates of
Rr403657 within coordinates of
Rr475907 within coordinates of
Tssr121731 708 bp downstream
SNP A/C C C C C C C C C C C C C C A C
rs579046258
MGI SNP Detail
Chr13:23805342 Cpgi5367 within coordinates of
Rr403657 within coordinates of
Rr475907 within coordinates of
Tssr121731 631 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs582554114
MGI SNP Detail
Chr13:23805403 Cpgi5367 within coordinates of
Rr475907 within coordinates of
Tssr121731 570 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29786923
MGI SNP Detail
Chr13:23805430 Cpgi5367 within coordinates of
Rr475907 within coordinates of
Tssr121731 543 bp downstream
SNP A/C C C C C C C C C C C A C C C C
rs218195241
MGI SNP Detail
Chr13:23805469 Rr475907 within coordinates of
Tssr121731 504 bp downstream
SNP C/T C T
rs232402603
MGI SNP Detail
Chr13:23805481 Rr475907 within coordinates of
Tssr121731 492 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251221331
MGI SNP Detail
Chr13:23805534 Rr475907 within coordinates of
Tssr121731 439 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29787856
MGI SNP Detail
Chr13:23805629 Tssr121731 344 bp downstream
SNP A/G A A A A G A A A A G A A G A A G A
rs229848507
MGI SNP Detail
Chr13:23805630 Tssr121731 343 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs260805981
MGI SNP Detail
Chr13:23805649 Tssr121731 324 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225989052
MGI SNP Detail
Chr13:23805681 Tssr121731 292 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs246634148
MGI SNP Detail
Chr13:23805697 Tssr121731 276 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262991763
MGI SNP Detail
Chr13:23805699 Tssr121731 274 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263971246
MGI SNP Detail
Chr13:23805730 Tssr121731 243 bp downstream
SNP A/G A G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237631863
MGI SNP Detail
Chr13:23805889 H1f4 within coordinates of
Tssr121729 within coordinates of
Tssr121731 84 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29787859
MGI SNP Detail
Chr13:23805893 H1f4 within coordinates of
Tssr121729 within coordinates of
Tssr121731 80 bp downstream
SNP A/G A A A A G A G A A G A G G A G G A
rs29787862
MGI SNP Detail
Chr13:23806088 Cpgi5368 within coordinates of
H1f4 within coordinates of
Tssr121731 102 bp upstream
Tssr121732 within coordinates of
SNP A/G A A A A G A A A A G A G G A A G A
rs29788655
MGI SNP Detail
Chr13:23806490 Cpgi5368 within coordinates of
H1f4 within coordinates of
Tssr121731 504 bp upstream
SNP C/T T T T T T T T T T T T T T C T
rs264166496
MGI SNP Detail
Chr13:23806522 Cpgi5368 within coordinates of
H1f4 within coordinates of
Tssr121731 536 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29788658
MGI SNP Detail
Chr13:23806717 Cpgi5368 within coordinates of
Rr475909 within coordinates of
Tssr121731 731 bp upstream
SNP A/T A A A A T A A A T A T T A T A
rs29788661
MGI SNP Detail
Chr13:23806898 Rr475909 within coordinates of
Tssr121731 912 bp upstream
SNP C/T T T T T T T T T T T C T T T T
rs29789624
MGI SNP Detail
Chr13:23807102 Tssr121731 1116 bp upstream
SNP A/G G G G G G G G G G G A G G G G
rs252982295
MGI SNP Detail
Chr13:23807116 Tssr121731 1130 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs214946429
MGI SNP Detail
Chr13:23807120 Tssr121731 1134 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226290908
MGI SNP Detail
Chr13:23807127 Tssr121731 1141 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs244716770
MGI SNP Detail
Chr13:23807176 Tssr121731 1190 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs212515850
MGI SNP Detail
Chr13:23807279 Tssr121731 1293 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29789627
MGI SNP Detail
Chr13:23807326 Tssr121731 1340 bp upstream
SNP C/T T T T T T C T T T C T C C T
rs29789630
MGI SNP Detail
Chr13:23807328 Tssr121731 1342 bp upstream
SNP A/G A A A A A A A A G A A G A G A
rs217898919
MGI SNP Detail
Chr13:23807384 Tssr121731 1398 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs29789633
MGI SNP Detail
Chr13:23807453 Tssr121731 1467 bp upstream
SNP A/T T T T T T T A T T T T T T T T
rs258842624
MGI SNP Detail
Chr13:23807491 Tssr121731 1505 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs220171326
MGI SNP Detail
Chr13:23807501 Tssr121731 1515 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs29790626
MGI SNP Detail
Chr13:23807524 Tssr121731 1538 bp upstream
SNP A/G A A A A A A A A A A G A A A A
rs231548843
MGI SNP Detail
Chr13:23807641 Tssr121731 1655 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248989359
MGI SNP Detail
Chr13:23807672 Tssr121731 1686 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 72 of 72

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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