About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr121897
transcription start site region 121897
MGI:6049664

<< first < prev1 next > last >>
Showing SNP(s) 1 - 66 of 66

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30029474
MGI SNP Detail
Chr13:29067318 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1999 bp downstream
SNP C/T T T T T T C T T C T T C
rs217166717
MGI SNP Detail
Chr13:29067320 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1997 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A
rs228175907
MGI SNP Detail
Chr13:29067349 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1968 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257840952
MGI SNP Detail
Chr13:29067374 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1943 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs215339446
MGI SNP Detail
Chr13:29067415 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1902 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240415051
MGI SNP Detail
Chr13:29067459 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1858 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs258247926
MGI SNP Detail
Chr13:29067480 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1837 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30028523
MGI SNP Detail
Chr13:29067487 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1830 bp downstream
SNP A/T A A A A A A A A T A A T
rs30028522
MGI SNP Detail
Chr13:29067526 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1791 bp downstream
SNP A/G G G G G G G A G G G G G G G G
rs30028521
MGI SNP Detail
Chr13:29067563 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1754 bp downstream
SNP A/G A A A A A A A A A A A G
rs223620361
MGI SNP Detail
Chr13:29067594 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1723 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs247709091
MGI SNP Detail
Chr13:29067636 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1681 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263384002
MGI SNP Detail
Chr13:29067674 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1643 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224305370
MGI SNP Detail
Chr13:29067675 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1642 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs246806759
MGI SNP Detail
Chr13:29067677 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1640 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs255367230
MGI SNP Detail
Chr13:29067678 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1639 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs224163671
MGI SNP Detail
Chr13:29067723 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1594 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs235756708
MGI SNP Detail
Chr13:29067737 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1580 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs259777163
MGI SNP Detail
Chr13:29067835 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1482 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233782649
MGI SNP Detail
Chr13:29067847 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1470 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30028520
MGI SNP Detail
Chr13:29067903 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1414 bp downstream
SNP C/G C C C C C C C C C C C C C G
rs215735463
MGI SNP Detail
Chr13:29067911 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1406 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A
rs230648713
MGI SNP Detail
Chr13:29067980 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1337 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs256673275
MGI SNP Detail
Chr13:29068032 2610307P16Rik within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1285 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs214002208
MGI SNP Detail
Chr13:29068143 2610307P16Rik within coordinates of
Cpgi5395 within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 1174 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231199936
MGI SNP Detail
Chr13:29068383 2610307P16Rik within coordinates of
Cpgi5395 within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 934 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs249884756
MGI SNP Detail
Chr13:29068388 2610307P16Rik within coordinates of
Cpgi5395 within coordinates of
Gm53780 within coordinates of
Rr281171 within coordinates of
Tssr121897 929 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A
rs217713706
MGI SNP Detail
Chr13:29068663 2610307P16Rik within coordinates of
Rr281171 within coordinates of
Tssr121897 654 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242271941
MGI SNP Detail
Chr13:29068846 2610307P16Rik within coordinates of
Rr281171 within coordinates of
Tssr121897 471 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259648878
MGI SNP Detail
Chr13:29068872 2610307P16Rik within coordinates of
Rr281171 within coordinates of
Tssr121897 445 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224243369
MGI SNP Detail
Chr13:29068891 2610307P16Rik within coordinates of
Rr281171 within coordinates of
Tssr121897 426 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs244216125
MGI SNP Detail
Chr13:29068897 2610307P16Rik within coordinates of
Rr281171 within coordinates of
Tssr121897 420 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs249818304
MGI SNP Detail
Chr13:29069111 2610307P16Rik within coordinates of
Cpgi5396 within coordinates of
Rr281171 within coordinates of
Tssr121897 206 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30028519
MGI SNP Detail
Chr13:29069197 2610307P16Rik within coordinates of
Cpgi5396 within coordinates of
Rr281171 within coordinates of
Tssr121897 120 bp downstream
SNP C/T T T T T T T C T T C T T C C
rs235864406
MGI SNP Detail
Chr13:29069275 2610307P16Rik within coordinates of
Cpgi5396 within coordinates of
Rr281171 within coordinates of
Tssr121896 within coordinates of
Tssr121897 42 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G G G T T T G T T T T T T G T T T T G T T G T T G G
rs259714498
MGI SNP Detail
Chr13:29069503 Rr281171 within coordinates of
Tssr121897 138 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs225655531
MGI SNP Detail
Chr13:29069573 Rr281171 within coordinates of
Tssr121897 208 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6226541
MGI SNP Detail
Chr13:29069677 Rr281171 within coordinates of
Tssr121897 312 bp upstream
SNP C/T T T T T T T T C C T T C T T C T
rs6239714
MGI SNP Detail
Chr13:29069722 Rr281171 within coordinates of
Tssr121897 357 bp upstream
SNP C/T T T T C C T C T C
rs230730533
MGI SNP Detail
Chr13:29069819 Rr281171 within coordinates of
Tssr121897 454 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs580767449
MGI SNP Detail
Chr13:29069919 Rr281171 within coordinates of
Tssr121897 554 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244700389
MGI SNP Detail
Chr13:29069969 Rr281171 within coordinates of
Tssr121897 604 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs256506522
MGI SNP Detail
Chr13:29070019 Rr281171 within coordinates of
Tssr121897 654 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs243898294
MGI SNP Detail
Chr13:29070037 Rr281171 within coordinates of
Tssr121897 672 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219397307
MGI SNP Detail
Chr13:29070053 Rr281171 within coordinates of
Tssr121897 688 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239782139
MGI SNP Detail
Chr13:29070202 Rr281171 within coordinates of
Tssr121897 837 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258414312
MGI SNP Detail
Chr13:29070295 Rr281171 within coordinates of
Tssr121897 930 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G A A A A G A A A A A A G A A A A G A A G A A A A
rs215928257
MGI SNP Detail
Chr13:29070333 Rr281171 within coordinates of
Tssr121897 968 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239236446
MGI SNP Detail
Chr13:29070369 Rr281171 within coordinates of
Tssr121897 1004 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs249751409
MGI SNP Detail
Chr13:29070382 Rr281171 within coordinates of
Tssr121897 1017 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584661687
MGI SNP Detail
Chr13:29070391 Rr281171 within coordinates of
Tssr121897 1026 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218753773
MGI SNP Detail
Chr13:29070504 Rr281171 within coordinates of
Tssr121897 1139 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A C C
rs229949241
MGI SNP Detail
Chr13:29070507 Rr281171 within coordinates of
Tssr121897 1142 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs30028518
MGI SNP Detail
Chr13:29070552 Rr281171 within coordinates of
Tssr121897 1187 bp upstream
SNP A/C C C C C C A A C C C
rs253176732
MGI SNP Detail
Chr13:29070554 Rr281171 within coordinates of
Tssr121897 1189 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226001060
MGI SNP Detail
Chr13:29070646 Rr281171 within coordinates of
Tssr121897 1281 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T T A A A A T A A A A A A T A A A A T A A T A A A A
rs246260209
MGI SNP Detail
Chr13:29070676 Rr281171 within coordinates of
Tssr121897 1311 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265483131
MGI SNP Detail
Chr13:29070772 Rr281171 within coordinates of
Tssr121897 1407 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223120381
MGI SNP Detail
Chr13:29070933 Rr281171 within coordinates of
Tssr121897 1568 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30028517
MGI SNP Detail
Chr13:29070985 Rr281171 within coordinates of
Tssr121897 1620 bp upstream
SNP A/G G G G G G G G G G A G G G G
rs238658825
MGI SNP Detail
Chr13:29071024 Rr281171 within coordinates of
Tssr121897 1659 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256441025
MGI SNP Detail
Chr13:29071207 Rr281171 within coordinates of
Tssr121897 1842 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs223928148
MGI SNP Detail
Chr13:29071298 Rr281171 within coordinates of
Tssr121897 1933 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs243840530
MGI SNP Detail
Chr13:29071301 Rr281171 within coordinates of
Tssr121897 1936 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs264607195
MGI SNP Detail
Chr13:29071331 Rr281171 within coordinates of
Tssr121897 1966 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234530015
MGI SNP Detail
Chr13:29071346 Rr281171 within coordinates of
Tssr121897 1981 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 66 of 66

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory