About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr122101
transcription start site region 122101
MGI:6049868

<< first < prev1 next > last >>
Showing SNP(s) 1 - 50 of 50

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245132440
MGI SNP Detail
Alliance Variant		 Chr13:36916469 Nrn1 Intron
Tssr122101 1931 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257941243
MGI SNP Detail
Alliance Variant		 Chr13:36916504 Nrn1 Intron
Tssr122101 1896 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C A C C C C C C C C C C C C
rs47624480
MGI SNP Detail
Alliance Variant		 Chr13:36916754 Nrn1 Intron
Tssr122101 1646 bp downstream
 SNP A/G A A A A A A G A A A A A A A A
rs256250261
MGI SNP Detail
Alliance Variant		 Chr13:36916768 Nrn1 Intron
Tssr122101 1632 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50459244
MGI SNP Detail
Alliance Variant		 Chr13:36916821 Nrn1 Intron
Tssr122101 1579 bp downstream
 SNP C/T C C C C C C C C C T C C T C
rs49774298
MGI SNP Detail
Alliance Variant		 Chr13:36916863 Nrn1 Intron
Tssr122101 1537 bp downstream
 SNP C/T T T T T T T C T T T C T T C T
rs253640959
MGI SNP Detail
Alliance Variant		 Chr13:36917109 Nrn1 Intron
Tssr122101 1291 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs217179347
MGI SNP Detail
Alliance Variant		 Chr13:36917147 Nrn1 Intron
Tssr122101 1253 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs233583443
MGI SNP Detail
Alliance Variant		 Chr13:36917348 Nrn1 Intron
Rr477394 within coordinates of
Tssr122101 1052 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs253437004
MGI SNP Detail
Alliance Variant		 Chr13:36917364 Nrn1 Intron
Rr477394 within coordinates of
Tssr122101 1036 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs29243259
MGI SNP Detail
Alliance Variant		 Chr13:36917544 Nrn1 Intron
Rr477394 within coordinates of
Tssr122101 856 bp downstream
 SNP C/T C C T C C
rs236507546
MGI SNP Detail
Alliance Variant		 Chr13:36917717 Nrn1 Intron
Rr477394 within coordinates of
Tssr122101 683 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs49420451
MGI SNP Detail
Alliance Variant		 Chr13:36917781 Nrn1 Intron
Rr477394 within coordinates of
Tssr122101 619 bp downstream
 SNP A/G A G
rs45983077
MGI SNP Detail
Alliance Variant		 Chr13:36918191 Nrn1 Intron
Rr477394 within coordinates of
Tssr122101 209 bp downstream
 SNP A/G G A A A A A G G G A G G G G A
rs46643908
MGI SNP Detail
Alliance Variant		 Chr13:36918202 Nrn1 Intron
Nrn1 Splice-Site
Rr477394 within coordinates of
Tssr122101 198 bp downstream
 SNP C/T C C C C C C C C C C C C C T C
rs29494756
MGI SNP Detail
Alliance Variant		 Chr13:36918443 Nrn1 Intron
Nrn1 mRNA-UTR
Rr477395 within coordinates of
Tssr122101 22 bp upstream
Tssr122102 within coordinates of
 SNP C/T T C T T
rs252695766
MGI SNP Detail
Alliance Variant		 Chr13:36918455 Nrn1 Intron
Rr477395 within coordinates of
Tssr122101 34 bp upstream
Tssr122102 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs29551036
MGI SNP Detail
Alliance Variant		 Chr13:36918710 Nrn1 Intron
Rr477395 within coordinates of
Tssr122101 289 bp upstream
 SNP A/G A A G A
rs581320259
MGI SNP Detail
Alliance Variant		 Chr13:36918711 Nrn1 Intron
Rr477395 within coordinates of
Tssr122101 290 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239390184
MGI SNP Detail
Alliance Variant		 Chr13:36918817 Cpgi5451 within coordinates of
Nrn1 Intron
Rr477395 within coordinates of
Tssr122101 396 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258333480
MGI SNP Detail
Alliance Variant		 Chr13:36918853 Cpgi5451 within coordinates of
Nrn1 Intron
Rr477395 within coordinates of
Tssr122101 432 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs225101426
MGI SNP Detail
Alliance Variant		 Chr13:36918875 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Nrn1 Intron
Rr477396 within coordinates of
Tssr122101 454 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs29249952
MGI SNP Detail
Alliance Variant		 Chr13:36918946 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Nrn1 Intron
Rr477396 within coordinates of
Tssr122101 525 bp upstream
 SNP A/G G G A A A A A G G A A G G A A
rs264636077
MGI SNP Detail
Alliance Variant		 Chr13:36918959 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Nrn1 Intron
Rr477396 within coordinates of
Tssr122101 538 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228752989
MGI SNP Detail
Alliance Variant		 Chr13:36918996 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Nrn1 Intron
Nrn1 Splice-Site
Rr477396 within coordinates of
Tssr122101 575 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259217779
MGI SNP Detail
Alliance Variant		 Chr13:36919020 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Nrn1 mRNA-UTR
Rr477396 within coordinates of
Tssr122101 599 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29570241
MGI SNP Detail
Alliance Variant		 Chr13:36919023 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Nrn1 mRNA-UTR
Rr477396 within coordinates of
Tssr122101 602 bp upstream
 SNP A/G A A G A
rs227080760
MGI SNP Detail
Alliance Variant		 Chr13:36919045 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Nrn1 mRNA-UTR
Rr477396 within coordinates of
Tssr122101 624 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247055238
MGI SNP Detail		 Chr13:36919121 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 700 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
rs213439620
MGI SNP Detail		 Chr13:36919189 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 768 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29610801
MGI SNP Detail		 Chr13:36919204 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 783 bp upstream
 SNP A/G G G A G
rs49651447
MGI SNP Detail		 Chr13:36919271 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 850 bp upstream
 SNP A/G A A A A A A A A A A G A A A
rs258138662
MGI SNP Detail		 Chr13:36919276 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 855 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs212684307
MGI SNP Detail		 Chr13:36919284 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 863 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A
rs235763090
MGI SNP Detail		 Chr13:36919336 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 915 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252907245
MGI SNP Detail		 Chr13:36919358 Cpgi5451 within coordinates of
Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 937 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222758472
MGI SNP Detail		 Chr13:36919439 Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 1018 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239311446
MGI SNP Detail		 Chr13:36919517 Gm56572 within coordinates of
Rr477396 within coordinates of
Tssr122101 1096 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs252066423
MGI SNP Detail		 Chr13:36919568 Rr477396 within coordinates of
Tssr122101 1147 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
rs222757666
MGI SNP Detail		 Chr13:36919581 Rr477396 within coordinates of
Tssr122101 1160 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246696036
MGI SNP Detail		 Chr13:36919604 Rr477396 within coordinates of
Tssr122101 1183 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs261390175
MGI SNP Detail		 Chr13:36919628 Rr477396 within coordinates of
Tssr122101 1207 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229124062
MGI SNP Detail		 Chr13:36919635 Rr477396 within coordinates of
Tssr122101 1214 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261289431
MGI SNP Detail		 Chr13:36919944 Cpgi5452 within coordinates of
Rr477396 within coordinates of
Tssr122101 1523 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs226994798
MGI SNP Detail		 Chr13:36919954 Cpgi5452 within coordinates of
Rr477396 within coordinates of
Tssr122101 1533 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs246968731
MGI SNP Detail		 Chr13:36920110 Cpgi5452 within coordinates of
Rr477396 within coordinates of
Tssr122101 1689 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs213403917
MGI SNP Detail		 Chr13:36920150 Cpgi5452 within coordinates of
Rr477396 within coordinates of
Tssr122101 1729 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230705326
MGI SNP Detail		 Chr13:36920185 Cpgi5452 within coordinates of
Rr477396 within coordinates of
Tssr122101 1764 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs252236665
MGI SNP Detail		 Chr13:36920238 Cpgi5452 within coordinates of
Rr477396 within coordinates of
Tssr122101 1817 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs212273840
MGI SNP Detail		 Chr13:36920341 Cpgi5452 within coordinates of
Rr477396 within coordinates of
Tssr122101 1920 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 50 of 50
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory