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Mouse SNP Summary
Symbol
Name
ID 		Tssr122620
transcription start site region 122620
MGI:6050387

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Showing SNP(s) 1 - 63 of 63

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229448821
MGI SNP Detail		 Chr13:54757153 Cltb within coordinates of
Rr388462 within coordinates of
Rr480257 within coordinates of
Tssr122620 1934 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255936458
MGI SNP Detail		 Chr13:54757179 Cltb within coordinates of
Rr388462 within coordinates of
Rr480257 within coordinates of
Tssr122620 1908 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
rs215177214
MGI SNP Detail		 Chr13:54757239 Cltb within coordinates of
Rr388462 within coordinates of
Rr480257 within coordinates of
Tssr122620 1848 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs240483922
MGI SNP Detail		 Chr13:54757409 Cltb within coordinates of
Rr388462 within coordinates of
Tssr122620 1678 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259714824
MGI SNP Detail		 Chr13:54757538 Cltb within coordinates of
Rr388462 within coordinates of
Tssr122620 1549 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216937995
MGI SNP Detail		 Chr13:54757544 Cltb within coordinates of
Rr388462 within coordinates of
Tssr122620 1543 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584722460
MGI SNP Detail		 Chr13:54757706 Cltb within coordinates of
Tssr122620 1381 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235319412
MGI SNP Detail		 Chr13:54757710 Cltb within coordinates of
Tssr122620 1377 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs248335962
MGI SNP Detail		 Chr13:54757715 Cltb within coordinates of
Tssr122620 1372 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218686489
MGI SNP Detail		 Chr13:54757724 Cltb within coordinates of
Tssr122620 1363 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs243228166
MGI SNP Detail		 Chr13:54757725 Cltb within coordinates of
Tssr122620 1362 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs262511591
MGI SNP Detail		 Chr13:54757804 Cltb within coordinates of
Tssr122620 1283 bp downstream
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T T C C C C C T C T C C C C T C C C C
rs47499065
MGI SNP Detail		 Chr13:54757914 Cltb within coordinates of
Tssr122620 1173 bp downstream
 SNP A/G G G G A
rs248955339
MGI SNP Detail		 Chr13:54757937 Cltb within coordinates of
Tssr122620 1150 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260498298
MGI SNP Detail		 Chr13:54758126 Cltb within coordinates of
Tssr122620 961 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229125785
MGI SNP Detail		 Chr13:54758427 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 660 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236922161
MGI SNP Detail		 Chr13:54758469 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 618 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C C
rs582993082
MGI SNP Detail		 Chr13:54758501 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 586 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256559930
MGI SNP Detail		 Chr13:54758621 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 466 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs229987339
MGI SNP Detail		 Chr13:54758784 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 303 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251162790
MGI SNP Detail		 Chr13:54758898 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 189 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265424651
MGI SNP Detail		 Chr13:54759009 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 78 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231969389
MGI SNP Detail		 Chr13:54759030 Cltb within coordinates of
Cpgi5644 within coordinates of
Tssr122620 57 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs246329586
MGI SNP Detail		 Chr13:54759170 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 60 bp upstream
Tssr122622 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs216883731
MGI SNP Detail		 Chr13:54759291 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 181 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235432394
MGI SNP Detail		 Chr13:54759323 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 213 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242618226
MGI SNP Detail		 Chr13:54759325 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 215 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs213058368
MGI SNP Detail		 Chr13:54759375 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 265 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs238339181
MGI SNP Detail		 Chr13:54759383 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 273 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257909032
MGI SNP Detail		 Chr13:54759480 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 370 bp upstream
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C C C C C C C T C C C C T T C C C C C T C T C C C C C C C C C
rs224311368
MGI SNP Detail		 Chr13:54759496 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 386 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50653516
MGI SNP Detail		 Chr13:54759499 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 389 bp upstream
 SNP G/T G G T G G G G G G T T G G T G
rs254385739
MGI SNP Detail		 Chr13:54759517 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 407 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs48330072
MGI SNP Detail		 Chr13:54759644 Cpgi5644 within coordinates of
Rr480260 within coordinates of
Tssr122620 534 bp upstream
 SNP A/G G G G G G G G G G G A G G A G
rs586389545
MGI SNP Detail		 Chr13:54759655 Cpgi5644 within coordinates of
Tssr122620 545 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579665033
MGI SNP Detail		 Chr13:54759658 Cpgi5644 within coordinates of
Tssr122620 548 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs237060625
MGI SNP Detail		 Chr13:54759729 Tssr122620 619 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581860840
MGI SNP Detail		 Chr13:54759848 Tssr122620 738 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256696709
MGI SNP Detail		 Chr13:54760015 Tssr122620 905 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222321429
MGI SNP Detail		 Chr13:54760102 Tssr122620 992 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A A A A A A T A A A A A A T A A A A A A A T A A A A
rs246630820
MGI SNP Detail		 Chr13:54760169 Tssr122620 1059 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A G A A A A A A A G A A A A
rs262994998
MGI SNP Detail		 Chr13:54760208 Tssr122620 1098 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232717697
MGI SNP Detail		 Chr13:54760391 Tssr122620 1281 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246270589
MGI SNP Detail		 Chr13:54760395 Tssr122620 1285 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs259425040
MGI SNP Detail		 Chr13:54760425 Tssr122620 1315 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579712126
MGI SNP Detail		 Chr13:54760469 Tssr122620 1359 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs229597335
MGI SNP Detail		 Chr13:54760490 Tssr122620 1380 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242556704
MGI SNP Detail		 Chr13:54760498 Tssr122620 1388 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213619662
MGI SNP Detail		 Chr13:54760501 Tssr122620 1391 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236341566
MGI SNP Detail		 Chr13:54760616 Tssr122620 1506 bp upstream
 SNP A/G G G G G A G G G G G G G G G G G G G G A G G A G G G G A A G G G A A A G G G G A A G A G G G G A G G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256512975
MGI SNP Detail		 Chr13:54760620 Tssr122620 1510 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T A A T T T T T A T A T T T T A T T T A
rs215770604
MGI SNP Detail		 Chr13:54760623 Tssr122620 1513 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T A T T T T T A T T T T T T T T T T T T T T A T T T T
rs234852972
MGI SNP Detail		 Chr13:54760672 Tssr122620 1562 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254540745
MGI SNP Detail		 Chr13:54760696 Tssr122620 1586 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs223431578
MGI SNP Detail		 Chr13:54760749 Tssr122620 1639 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229887618
MGI SNP Detail		 Chr13:54760765 Tssr122620 1655 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587332066
MGI SNP Detail		 Chr13:54760834 Tssr122620 1724 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs250276197
MGI SNP Detail		 Chr13:54760866 Tssr122620 1756 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs221975661
MGI SNP Detail		 Chr13:54761048 Tssr122620 1938 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
rs243805416
MGI SNP Detail		 Chr13:54761052 Tssr122620 1942 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G
rs265444106
MGI SNP Detail		 Chr13:54761059 Tssr122620 1949 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A C A A A A A A A A A A A
rs580890583
MGI SNP Detail		 Chr13:54761064 Tssr122620 1954 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584206214
MGI SNP Detail		 Chr13:54761067 Tssr122620 1957 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
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Showing SNP(s) 1 - 63 of 63
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory