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Mouse SNP Summary
Symbol
Name
ID 		Tssr122747
transcription start site region 122747
MGI:6050514

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47758624
MGI SNP Detail		 Chr13:56281769 Macroh2a1 within coordinates of
Tssr122747 1881 bp downstream
 SNP G/T G G G G G G G G G G T G G T G
rs224011348
MGI SNP Detail		 Chr13:56281800 Macroh2a1 within coordinates of
Tssr122747 1850 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238261788
MGI SNP Detail		 Chr13:56281805 Macroh2a1 within coordinates of
Tssr122747 1845 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255317048
MGI SNP Detail		 Chr13:56281829 Macroh2a1 within coordinates of
Tssr122747 1821 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs587023245
MGI SNP Detail		 Chr13:56281842 Macroh2a1 within coordinates of
Tssr122747 1808 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs218678940
MGI SNP Detail		 Chr13:56281860 Macroh2a1 within coordinates of
Tssr122747 1790 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs235946473
MGI SNP Detail		 Chr13:56281913 Macroh2a1 within coordinates of
Tssr122747 1737 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581487187
MGI SNP Detail		 Chr13:56281952 Macroh2a1 within coordinates of
Tssr122747 1698 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs259976985
MGI SNP Detail		 Chr13:56281962 Macroh2a1 within coordinates of
Tssr122747 1688 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233266665
MGI SNP Detail		 Chr13:56281968 Macroh2a1 within coordinates of
Tssr122747 1682 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258435840
MGI SNP Detail		 Chr13:56282078 Macroh2a1 within coordinates of
Tssr122747 1572 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231442527
MGI SNP Detail		 Chr13:56282337 Macroh2a1 within coordinates of
Tssr122747 1313 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs245264494
MGI SNP Detail		 Chr13:56282428 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 1222 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213236962
MGI SNP Detail		 Chr13:56282429 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 1221 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs29525610
MGI SNP Detail		 Chr13:56282519 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 1131 bp downstream
 SNP A/G A A G A A
rs243189599
MGI SNP Detail		 Chr13:56282592 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 1058 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G A A A A A A G A A A A A A A G A A A A
rs218738227
MGI SNP Detail		 Chr13:56282608 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 1042 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239185045
MGI SNP Detail		 Chr13:56282636 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 1014 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs263194482
MGI SNP Detail		 Chr13:56282701 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 949 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223997318
MGI SNP Detail		 Chr13:56282707 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 943 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs232013593
MGI SNP Detail		 Chr13:56282755 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 895 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249615183
MGI SNP Detail		 Chr13:56282807 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 843 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218620602
MGI SNP Detail		 Chr13:56282900 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 750 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs235873491
MGI SNP Detail		 Chr13:56282921 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 729 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264424434
MGI SNP Detail		 Chr13:56283014 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 636 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226244811
MGI SNP Detail		 Chr13:56283072 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 578 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246511484
MGI SNP Detail		 Chr13:56283373 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 277 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C
rs265538971
MGI SNP Detail		 Chr13:56283374 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 276 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226763387
MGI SNP Detail		 Chr13:56283405 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 245 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs584798092
MGI SNP Detail		 Chr13:56283434 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 216 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs579272609
MGI SNP Detail		 Chr13:56283439 Cpgi5695 within coordinates of
Macroh2a1 within coordinates of
Tssr122747 211 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs582679161
MGI SNP Detail		 Chr13:56283440 Cpgi5695 within coordinates of
Tssr122747 210 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584098572
MGI SNP Detail		 Chr13:56283443 Cpgi5695 within coordinates of
Tssr122743 within coordinates of
Tssr122747 207 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245254251
MGI SNP Detail		 Chr13:56283446 Cpgi5695 within coordinates of
Tssr122743 within coordinates of
Tssr122747 204 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs257065685
MGI SNP Detail		 Chr13:56283516 Cpgi5695 within coordinates of
Tssr122747 134 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224559248
MGI SNP Detail		 Chr13:56283532 Cpgi5695 within coordinates of
Tssr122747 118 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs249115587
MGI SNP Detail		 Chr13:56283630 Cpgi5695 within coordinates of
Tssr122747 20 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218591960
MGI SNP Detail		 Chr13:56283649 Cpgi5695 within coordinates of
Tssr122747 1 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6201194
MGI SNP Detail		 Chr13:56283720 Cpgi5695 within coordinates of
Tssr122747 59 bp upstream
Tssr122748 within coordinates of
 SNP C/T C T
rs252850411
MGI SNP Detail		 Chr13:56283754 Cpgi5695 within coordinates of
Tssr122747 93 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C T C C C C T T C
rs215896491
MGI SNP Detail		 Chr13:56283773 Cpgi5695 within coordinates of
Tssr122747 112 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs29231560
MGI SNP Detail		 Chr13:56283786 Cpgi5695 within coordinates of
Tssr122747 125 bp upstream
 SNP G/T G T G G
rs249557592
MGI SNP Detail		 Chr13:56283806 Cpgi5695 within coordinates of
Tssr122747 145 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212734663
MGI SNP Detail		 Chr13:56283811 Cpgi5695 within coordinates of
Tssr122747 150 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229903790
MGI SNP Detail		 Chr13:56283826 Cpgi5695 within coordinates of
Tssr122747 165 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264175378
MGI SNP Detail		 Chr13:56283885 Tssr122747 224 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225738315
MGI SNP Detail		 Chr13:56283886 Tssr122747 225 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs249188542
MGI SNP Detail		 Chr13:56283961 Tssr122747 300 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258761956
MGI SNP Detail		 Chr13:56283986 Tssr122747 325 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220421979
MGI SNP Detail		 Chr13:56284143 Tssr122747 482 bp upstream
 SNP C/T C C C T C C T T C C T T C C C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239112037
MGI SNP Detail		 Chr13:56284296 Tssr122747 635 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs578510200
MGI SNP Detail		 Chr13:56284384 Tssr122747 723 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs256957047
MGI SNP Detail		 Chr13:56284570 Tssr122747 909 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224431664
MGI SNP Detail		 Chr13:56284659 Tssr122747 998 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248653034
MGI SNP Detail		 Chr13:56284701 Tssr122747 1040 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs232773467
MGI SNP Detail		 Chr13:56284794 Tssr122747 1133 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257827447
MGI SNP Detail		 Chr13:56284814 Tssr122747 1153 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
rs215337747
MGI SNP Detail		 Chr13:56284891 Tssr122747 1230 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs225827376
MGI SNP Detail		 Chr13:56284905 Tssr122747 1244 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243589719
MGI SNP Detail		 Chr13:56284922 Tssr122747 1261 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs48249389
MGI SNP Detail		 Chr13:56284987 Tssr122747 1326 bp upstream
 SNP A/G A G
rs229814538
MGI SNP Detail		 Chr13:56285040 Tssr122747 1379 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260819694
MGI SNP Detail		 Chr13:56285042 Tssr122747 1381 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs218076822
MGI SNP Detail		 Chr13:56285076 Tssr122747 1415 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G
rs238684164
MGI SNP Detail		 Chr13:56285125 Tssr122747 1464 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262933592
MGI SNP Detail		 Chr13:56285273 Tssr122747 1612 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220315295
MGI SNP Detail		 Chr13:56285407 Tssr122747 1746 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs238990702
MGI SNP Detail		 Chr13:56285429 Tssr122747 1768 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs29547406
MGI SNP Detail		 Chr13:56285445 Tssr122747 1784 bp upstream
 SNP A/G G A G G G
rs218348012
MGI SNP Detail		 Chr13:56285507 Tssr122747 1846 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs251739827
MGI SNP Detail		 Chr13:56285521 Tssr122747 1860 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs264175860
MGI SNP Detail		 Chr13:56285537 Tssr122747 1876 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233545544
MGI SNP Detail		 Chr13:56285619 Tssr122747 1958 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
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Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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