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Mouse SNP Summary
Symbol
Name
ID 		Tssr123272
transcription start site region 123272
MGI:6051039

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583578470
MGI SNP Detail		 Chr13:77193550 Rr273760 within coordinates of
Slf1 within coordinates of
Tssr123272 1974 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224854797
MGI SNP Detail		 Chr13:77193580 Rr273760 within coordinates of
Slf1 within coordinates of
Tssr123272 1944 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs49395166
MGI SNP Detail		 Chr13:77193617 Rr273760 within coordinates of
Slf1 within coordinates of
Tssr123272 1907 bp downstream
 SNP A/G G A G
rs30291214
MGI SNP Detail		 Chr13:77193797 Rr273760 within coordinates of
Slf1 within coordinates of
Tssr123272 1727 bp downstream
 SNP C/T T T T T T C T T T T T T T T T
rs29533616
MGI SNP Detail		 Chr13:77193877 Slf1 within coordinates of
Tssr123272 1647 bp downstream
 SNP C/G G G G G C C G G G G C G G C G
rs255287754
MGI SNP Detail		 Chr13:77193933 Slf1 within coordinates of
Tssr123272 1591 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263718324
MGI SNP Detail		 Chr13:77193990 Slf1 within coordinates of
Tssr123272 1534 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232348864
MGI SNP Detail		 Chr13:77194013 Slf1 within coordinates of
Tssr123272 1511 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252189864
MGI SNP Detail		 Chr13:77194016 Slf1 within coordinates of
Tssr123272 1508 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218924723
MGI SNP Detail		 Chr13:77194054 Slf1 within coordinates of
Tssr123272 1470 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235539812
MGI SNP Detail		 Chr13:77194088 Slf1 within coordinates of
Tssr123272 1436 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244275227
MGI SNP Detail		 Chr13:77194108 Slf1 within coordinates of
Tssr123272 1416 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29249281
MGI SNP Detail		 Chr13:77194183 Slf1 within coordinates of
Tssr123272 1341 bp downstream
 SNP C/T C C C C C C C T T C C C C T C T C C
rs232411119
MGI SNP Detail		 Chr13:77194220 Slf1 within coordinates of
Tssr123272 1304 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261800072
MGI SNP Detail		 Chr13:77194229 Slf1 within coordinates of
Tssr123272 1295 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs224803602
MGI SNP Detail		 Chr13:77194271 Slf1 within coordinates of
Tssr123272 1253 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29544557
MGI SNP Detail		 Chr13:77194291 Slf1 within coordinates of
Tssr123272 1233 bp downstream
 SNP A/T T T T T T T T A A T T T T A T T A T T
rs261124947
MGI SNP Detail		 Chr13:77194471 Slf1 within coordinates of
Tssr123272 1053 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222206048
MGI SNP Detail		 Chr13:77194493 Slf1 within coordinates of
Tssr123272 1031 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs236940562
MGI SNP Detail		 Chr13:77194585 Slf1 within coordinates of
Tssr123272 939 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29959109
MGI SNP Detail		 Chr13:77194633 Slf1 within coordinates of
Tssr123272 891 bp downstream
 SNP A/G A A A G A A A
rs220324515
MGI SNP Detail		 Chr13:77194646 Slf1 within coordinates of
Tssr123272 878 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs13481890
MGI SNP Detail		 Chr13:77194690 Slf1 within coordinates of
Tssr123272 834 bp downstream
 SNP C/T T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C
rs265731840
MGI SNP Detail		 Chr13:77194859 Rr281681 within coordinates of
Slf1 within coordinates of
Tssr123272 665 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29683683
MGI SNP Detail		 Chr13:77194917 Rr281681 within coordinates of
Slf1 within coordinates of
Tssr123272 607 bp downstream
 SNP A/G A A A A A A A G G A A A A G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29554405
MGI SNP Detail		 Chr13:77194951 Rr281681 within coordinates of
Slf1 within coordinates of
Tssr123272 573 bp downstream
 SNP C/T T T T T T C C T T T C C T T
rs29822693
MGI SNP Detail		 Chr13:77194966 Rr281681 within coordinates of
Slf1 within coordinates of
Tssr123272 558 bp downstream
 SNP C/T T T T T T C C T T T T C C T T
rs29860480
MGI SNP Detail		 Chr13:77195017 Slf1 within coordinates of
Tssr123272 507 bp downstream
 SNP C/T C C T C C C
rs45979217
MGI SNP Detail		 Chr13:77195117 Slf1 within coordinates of
Tssr123272 407 bp downstream
 SNP A A A A A
rs212043325
MGI SNP Detail		 Chr13:77195159 Slf1 within coordinates of
Tssr123272 365 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238975260
MGI SNP Detail		 Chr13:77195191 Slf1 within coordinates of
Tssr123272 333 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250416584
MGI SNP Detail		 Chr13:77195201 Slf1 within coordinates of
Tssr123272 323 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs30024606
MGI SNP Detail		 Chr13:77195205 Slf1 within coordinates of
Tssr123272 319 bp downstream
 SNP A/G A A G A A A
rs29589358
MGI SNP Detail		 Chr13:77195207 Slf1 within coordinates of
Tssr123272 317 bp downstream
 SNP A/C A A A A A A C C A A A A C A A C A A
rs264100090
MGI SNP Detail		 Chr13:77195266 Slf1 within coordinates of
Tssr123272 258 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221789656
MGI SNP Detail		 Chr13:77195444 Slf1 within coordinates of
Tssr123272 80 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs46617156
MGI SNP Detail		 Chr13:77195460 Slf1 within coordinates of
Tssr123272 64 bp downstream
 SNP A A A A A
rs248424008
MGI SNP Detail		 Chr13:77195463 Slf1 within coordinates of
Tssr123272 61 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220409093
MGI SNP Detail		 Chr13:77195471 Slf1 within coordinates of
Tssr123272 53 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246379174
MGI SNP Detail		 Chr13:77195480 Slf1 within coordinates of
Tssr123272 44 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263623399
MGI SNP Detail		 Chr13:77195492 Slf1 within coordinates of
Tssr123272 32 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224320677
MGI SNP Detail		 Chr13:77195493 Slf1 within coordinates of
Tssr123272 31 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248373979
MGI SNP Detail		 Chr13:77195506 Slf1 within coordinates of
Tssr123272 18 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587154493
MGI SNP Detail		 Chr13:77195517 Slf1 within coordinates of
Tssr123272 7 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs581551356
MGI SNP Detail		 Chr13:77195518 Slf1 within coordinates of
Tssr123272 6 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584114696
MGI SNP Detail		 Chr13:77195521 Slf1 within coordinates of
Tssr123272 3 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs586748332
MGI SNP Detail		 Chr13:77195539 Slf1 within coordinates of
Tssr123272 2 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260781479
MGI SNP Detail		 Chr13:77195545 Slf1 within coordinates of
Tssr123272 8 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225094529
MGI SNP Detail		 Chr13:77195553 Slf1 within coordinates of
Tssr123272 16 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs580653682
MGI SNP Detail		 Chr13:77195587 Slf1 within coordinates of
Tssr123272 50 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584660122
MGI SNP Detail		 Chr13:77195598 Slf1 within coordinates of
Tssr123272 61 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs578615035
MGI SNP Detail		 Chr13:77195617 Slf1 within coordinates of
Tssr123272 80 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs582391558
MGI SNP Detail		 Chr13:77195917 D13Mit231 within coordinates of
Slf1 within coordinates of
Tssr123272 380 bp upstream
 SNP A/G A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs52594875
MGI SNP Detail		 Chr13:77195921 D13Mit231 within coordinates of
Slf1 within coordinates of
Tssr123272 384 bp upstream
 SNP A/G A G
rs30289283
MGI SNP Detail		 Chr13:77195999 Slf1 within coordinates of
Tssr123272 462 bp upstream
 SNP A/G A A A A A A A G A A A A G A A G A A
rs255903774
MGI SNP Detail		 Chr13:77196029 Slf1 within coordinates of
Tssr123272 492 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29237547
MGI SNP Detail		 Chr13:77196071 Slf1 within coordinates of
Tssr123272 534 bp upstream
 SNP G/T G T G G G
rs29784740
MGI SNP Detail		 Chr13:77196075 Slf1 within coordinates of
Tssr123272 538 bp upstream
 SNP C/G C G C C C
rs216612416
MGI SNP Detail		 Chr13:77196077 Slf1 within coordinates of
Tssr123272 540 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29237766
MGI SNP Detail		 Chr13:77196099 Slf1 within coordinates of
Tssr123272 562 bp upstream
 SNP C/T C T C C C
rs29510571
MGI SNP Detail		 Chr13:77196116 Slf1 within coordinates of
Tssr123272 579 bp upstream
 SNP C/T T C T T T
rs30289282
MGI SNP Detail		 Chr13:77196309 Slf1 within coordinates of
Tssr123272 772 bp upstream
 SNP C/T C C C C C C C C C C T C C C C
rs29237462
MGI SNP Detail		 Chr13:77196328 Slf1 within coordinates of
Tssr123272 791 bp upstream
 SNP A/G G G G G G G G A A G G G G A G G A G G
rs230507355
MGI SNP Detail		 Chr13:77196336 Slf1 within coordinates of
Tssr123272 799 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs30042023
MGI SNP Detail		 Chr13:77196410 Slf1 within coordinates of
Tssr123272 873 bp upstream
 SNP A/T T T T T T T T A A T T T T A T T A T T
rs214652852
MGI SNP Detail		 Chr13:77196413 Slf1 within coordinates of
Tssr123272 876 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29821304
MGI SNP Detail		 Chr13:77196419 Slf1 within coordinates of
Tssr123272 882 bp upstream
 SNP A/G/T T T G G T T G A T
rs263574759
MGI SNP Detail		 Chr13:77196473 Slf1 within coordinates of
Tssr123272 936 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224521450
MGI SNP Detail		 Chr13:77196549 Slf1 within coordinates of
Tssr123272 1012 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs29851313
MGI SNP Detail		 Chr13:77196811 Slf1 within coordinates of
Tssr123272 1274 bp upstream
 SNP A/G G G A G G G
rs29246375
MGI SNP Detail		 Chr13:77196812 Slf1 within coordinates of
Tssr123272 1275 bp upstream
 SNP C/T T T C T T T
rs219060593
MGI SNP Detail		 Chr13:77197093 Slf1 within coordinates of
Tssr123272 1556 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29530893
MGI SNP Detail		 Chr13:77197101 Slf1 within coordinates of
Tssr123272 1564 bp upstream
 SNP A/G G G G G G G G A A G G G G A G G A G G
rs255936117
MGI SNP Detail		 Chr13:77197107 Slf1 within coordinates of
Tssr123272 1570 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30289281
MGI SNP Detail		 Chr13:77197441 Slf1 within coordinates of
Tssr123272 1904 bp upstream
 SNP C/T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29583773
MGI SNP Detail		 Chr13:77197472 Slf1 within coordinates of
Tssr123272 1935 bp upstream
 SNP A/G G A G G G
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Showing SNP(s) 1 - 76 of 76
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory