About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr124778
transcription start site region 124778
MGI:6052545

<< first < prev1 next > last >>
Showing SNP(s) 1 - 71 of 71

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261263415
MGI SNP Detail
Chr14:28224607 Tssr124778 1915 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs234012320
MGI SNP Detail
Chr14:28224612 Tssr124778 1910 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs249570034
MGI SNP Detail
Chr14:28224644 Tssr124778 1878 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs264464793
MGI SNP Detail
Chr14:28224700 Tssr124778 1822 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs230729617
MGI SNP Detail
Chr14:28224710 Tssr124778 1812 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs243612494
MGI SNP Detail
Chr14:28224751 Tssr124778 1771 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216215164
MGI SNP Detail
Chr14:28224791 Tssr124778 1731 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233111980
MGI SNP Detail
Chr14:28224804 Tssr124778 1718 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247681745
MGI SNP Detail
Chr14:28224820 Tssr124778 1702 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584403928
MGI SNP Detail
Chr14:28225021 Tssr124778 1501 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs218581438
MGI SNP Detail
Chr14:28225035 Tssr124778 1487 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237512023
MGI SNP Detail
Chr14:28225036 Tssr124778 1486 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs578617365
MGI SNP Detail
Chr14:28225077 Tssr124778 1445 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs582276077
MGI SNP Detail
Chr14:28225101 Tssr124778 1421 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs586047452
MGI SNP Detail
Chr14:28225106 Tssr124778 1416 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs255604629
MGI SNP Detail
Chr14:28225146 Tssr124778 1376 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs16808071
MGI SNP Detail
Chr14:28225243 Tssr124778 1279 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C T
rs232020065
MGI SNP Detail
Chr14:28225262 Tssr124778 1260 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253759473
MGI SNP Detail
Chr14:28225272 Tssr124778 1250 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs16808070
MGI SNP Detail
Chr14:28225415 Tssr124778 1107 bp upstream
SNP C/T T T T T T T T T T T C T T T T T T T T T T T
rs16808069
MGI SNP Detail
Chr14:28225463 Tssr124778 1059 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G T
rs16808068
MGI SNP Detail
Chr14:28225490 Tssr124778 1032 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C T
rs225742786
MGI SNP Detail
Chr14:28225662 Tssr124778 860 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244992284
MGI SNP Detail
Chr14:28225686 Tssr124778 836 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582993851
MGI SNP Detail
Chr14:28225751 Tssr124778 771 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs585507454
MGI SNP Detail
Chr14:28225761 Tssr124778 761 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs16808072
MGI SNP Detail
Chr14:28225837 Tssr124778 685 bp upstream
SNP A/G A A A A A A A A A A G A A A A A A A A A A A
rs16808073
MGI SNP Detail
Chr14:28225869 Tssr124778 653 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A
rs16808074
MGI SNP Detail
Chr14:28225901 Tssr124778 621 bp upstream
SNP A/G A A A A A A A A A A G A A A A G A A A A A G
rs16808076
MGI SNP Detail
Chr14:28226117 Tssr124778 405 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C G
rs16808077
MGI SNP Detail
Chr14:28226142 Tssr124778 380 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A
rs16808078
MGI SNP Detail
Chr14:28226143 Tssr124778 379 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A
rs218434939
MGI SNP Detail
Chr14:28226183 Tssr124778 339 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs16808081
MGI SNP Detail
Chr14:28226265 Tssr124778 257 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G A
rs229364462
MGI SNP Detail
Chr14:28226273 Tssr124778 249 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs579820525
MGI SNP Detail
Chr14:28226280 Tssr124778 242 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs253335980
MGI SNP Detail
Chr14:28226281 Tssr124778 241 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs214882324
MGI SNP Detail
Chr14:28226319 Tssr124778 203 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs231857783
MGI SNP Detail
Chr14:28226366 Tssr124778 156 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs16808086
MGI SNP Detail
Chr14:28226401 Tssr124778 121 bp upstream
SNP C/G C C C C C C C C C C C C C C C C G
rs215355520
MGI SNP Detail
Chr14:28226523 Tssr124778 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs236528345
MGI SNP Detail
Chr14:28226529 Tssr124778 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs256350831
MGI SNP Detail
Chr14:28226538 Tssr124778 within coordinates of
SNP A/C C A
rs583555184
MGI SNP Detail
Chr14:28226585 Tssr124778 23 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs16808085
MGI SNP Detail
Chr14:28226709 Cpgi6258 within coordinates of
Tssr124778 147 bp downstream
Tssr124781 within coordinates of
Wnt5a within coordinates of
SNP A/G A A A A A A A A A A A A A A G
rs16808084
MGI SNP Detail
Chr14:28226797 Cpgi6258 within coordinates of
Tssr124778 235 bp downstream
Wnt5a within coordinates of
SNP A/T T T T T T T A T T T T T T T A
rs16808083
MGI SNP Detail
Chr14:28226804 Cpgi6258 within coordinates of
Tssr124778 242 bp downstream
Wnt5a within coordinates of
SNP A/C A A A A A A A A C A A A A A A A C
rs260883724
MGI SNP Detail
Chr14:28226824 Cpgi6258 within coordinates of
Tssr124778 262 bp downstream
Wnt5a within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs16808082
MGI SNP Detail
Chr14:28226856 Cpgi6258 within coordinates of
Tssr124778 294 bp downstream
Wnt5a within coordinates of
SNP C/T C C C C C C C C C C C C C C C T
rs257705029
MGI SNP Detail
Chr14:28226988 Cpgi6258 within coordinates of
Tssr124778 426 bp downstream
Wnt5a within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs16808087
MGI SNP Detail
Chr14:28227103 Cpgi6258 within coordinates of
Tssr124778 541 bp downstream
Wnt5a within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C T
rs241340702
MGI SNP Detail
Chr14:28227261 Cpgi6258 within coordinates of
Tssr124778 699 bp downstream
Wnt5a within coordinates of
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs264174678
MGI SNP Detail
Chr14:28227272 Cpgi6258 within coordinates of
Tssr124778 710 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs587385026
MGI SNP Detail
Chr14:28227273 Cpgi6258 within coordinates of
Tssr124778 711 bp downstream
Wnt5a within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G T G G G G G G G G G G G
rs581570121
MGI SNP Detail
Chr14:28227328 Cpgi6258 within coordinates of
Tssr124778 766 bp downstream
Wnt5a within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs584221545
MGI SNP Detail
Chr14:28227345 Cpgi6258 within coordinates of
Tssr124778 783 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229559149
MGI SNP Detail
Chr14:28227401 Cpgi6258 within coordinates of
Tssr124778 839 bp downstream
Wnt5a within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G C G G G G
rs16808091
MGI SNP Detail
Chr14:28227434 Cpgi6258 within coordinates of
Tssr124778 872 bp downstream
Tssr124783 within coordinates of
Wnt5a within coordinates of
SNP C/T C C C C C C C C C C C C C C C C T
rs215673676
MGI SNP Detail
Chr14:28227502 Cpgi6258 within coordinates of
Tssr124778 940 bp downstream
Tssr124785 within coordinates of
Wnt5a within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T A T T T A T T T T T T A T T T T T T T A T T A A
rs226103968
MGI SNP Detail
Chr14:28227801 Cpgi6258 within coordinates of
Tssr124778 1239 bp downstream
Wnt5a within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G T T
rs247319431
MGI SNP Detail
Chr14:28227874 Cpgi6258 within coordinates of
Tssr124778 1312 bp downstream
Wnt5a within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A G A A A G A A A A A A G A A A A A A A G A A G G
rs215250336
MGI SNP Detail
Chr14:28227889 Cpgi6258 within coordinates of
Tssr124778 1327 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs236619112
MGI SNP Detail
Chr14:28228048 Cpgi6258 within coordinates of
Tssr124778 1486 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs259345646
MGI SNP Detail
Chr14:28228106 Cpgi6258 within coordinates of
Tssr124778 1544 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs217896466
MGI SNP Detail
Chr14:28228107 Cpgi6258 within coordinates of
Tssr124778 1545 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs237139534
MGI SNP Detail
Chr14:28228108 Cpgi6258 within coordinates of
Tssr124778 1546 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T
rs255336359
MGI SNP Detail
Chr14:28228153 Cpgi6258 within coordinates of
Tssr124778 1591 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs220024299
MGI SNP Detail
Chr14:28228225 Cpgi6258 within coordinates of
Tssr124778 1663 bp downstream
Wnt5a within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T A T T T T T T T T T T T T
rs231386527
MGI SNP Detail
Chr14:28228385 Cpgi6258 within coordinates of
Tssr124778 1823 bp downstream
Wnt5a within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C T C C C T C C C C C C T C C C C C C C T C C T T
rs251702438
MGI SNP Detail
Chr14:28228397 Cpgi6258 within coordinates of
Tssr124778 1835 bp downstream
Wnt5a within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs220435900
MGI SNP Detail
Chr14:28228438 Cpgi6258 within coordinates of
Tssr124778 1876 bp downstream
Wnt5a within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 71 of 71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory