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Mouse SNP Summary
Symbol
Name
ID 		Tssr125530
transcription start site region 125530
MGI:6053297

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Showing SNP(s) 1 - 35 of 35

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs3153542
MGI SNP Detail		 Chr14:54357415 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1917 bp upstream
 SNP A/G G G A G G A G
rs3155464
MGI SNP Detail		 Chr14:54357855 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1477 bp upstream
 SNP A/G A A A A A G G A A A A G G A A A A A
rs48543585
MGI SNP Detail		 Chr14:54357926 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1406 bp upstream
 SNP A/C C C C C C C A C C C C C C C C
rs49291745
MGI SNP Detail		 Chr14:54358253 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1079 bp upstream
 SNP C/T C C C C C T C C C C C C C C
rs3153543
MGI SNP Detail		 Chr14:54358325 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1007 bp upstream
 SNP A/G A A G A A A
rs46034919
MGI SNP Detail		 Chr14:54358880 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 452 bp upstream
 SNP A/T A A A A A A T A A A A T A T
rs47745077
MGI SNP Detail		 Chr14:54358997 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 335 bp upstream
 SNP A/G G G G G G A G G G G G G G G
rs45658873
MGI SNP Detail		 Chr14:54359091 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 241 bp upstream
 SNP A/G G G G G G G A G G G G G G G G
rs45861669
MGI SNP Detail		 Chr14:54359143 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 189 bp upstream
 SNP C/T T T T T T T C T T T T T T T T
rs3155465
MGI SNP Detail		 Chr14:54359177 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 155 bp upstream
 SNP A/G A A A A A G A A A A A G A A A A A
rs3155466
MGI SNP Detail		 Chr14:54359301 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 31 bp upstream
 SNP A/G G G G G G A G G G G G A G G G G G
rs3155467
MGI SNP Detail		 Chr14:54359391 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 30 bp downstream
Tssr125532 within coordinates of
 SNP G/T T T T T T T G T T T G T T T G
rs3153544
MGI SNP Detail		 Chr14:54359432 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 71 bp downstream
 SNP C/T C C C C C T T C C C C T C C C C C
rs3153545
MGI SNP Detail		 Chr14:54359621 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 260 bp downstream
Tssr125536 within coordinates of
 SNP C/T C C C C C C T C C C C C T C C C C C
rs3153546
MGI SNP Detail		 Chr14:54359865 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 504 bp downstream
 SNP G/T T T T T T T G G T T T T G T T T T T
rs3153547
MGI SNP Detail		 Chr14:54359937 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 576 bp downstream
 SNP C/T T T T T T T C T T T T T C T T T T T
rs3153548
MGI SNP Detail		 Chr14:54359942 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 581 bp downstream
 SNP A/T A T A A A
rs3155468
MGI SNP Detail		 Chr14:54360074 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 713 bp downstream
 SNP A/G A A A A A A A G G A A A A G A A A A A
rs3155469
MGI SNP Detail		 Chr14:54360160 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 799 bp downstream
 SNP A/G G G G G G G G A A G G G G A G G G G G
rs3153549
MGI SNP Detail		 Chr14:54360189 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 828 bp downstream
 SNP C/T C C C C C C C T T C C C C T C C C C C
rs3153550
MGI SNP Detail		 Chr14:54360447 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1086 bp downstream
 SNP C/T T T T T T T T C C T T T T C T T T T T
rs3153551
MGI SNP Detail		 Chr14:54360506 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1145 bp downstream
 SNP A/C C C C C C C C A A C C C C A C C C C C
rs51050259
MGI SNP Detail		 Chr14:54360585 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1224 bp downstream
Tssr125539 within coordinates of
 SNP A/G A A A A A A A A A A A A G A G
rs48584643
MGI SNP Detail		 Chr14:54360756 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1395 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs241777954
MGI SNP Detail		 Chr14:54360919 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1558 bp downstream
 SNP A/G G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs259347498
MGI SNP Detail		 Chr14:54360923 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1562 bp downstream
 SNP A/G G A
rs52351166
MGI SNP Detail		 Chr14:54360956 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1595 bp downstream
 SNP G/T T T T T T T T T T T T G T T T T T
rs249453355
MGI SNP Detail		 Chr14:54361030 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1669 bp downstream
 SNP A A A
rs48623125
MGI SNP Detail		 Chr14:54361038 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1677 bp downstream
 SNP A/G G G G G G G G G G G G A G G G G G
rs48689773
MGI SNP Detail		 Chr14:54361072 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1711 bp downstream
Tssr128533 within coordinates of
 SNP A/G G G G G G G A G G G G G G G
rs47105690
MGI SNP Detail		 Chr14:54361079 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1718 bp downstream
Tssr128533 within coordinates of
 SNP C/G G G G G G G G G G G C G G G G G
rs50584009
MGI SNP Detail		 Chr14:54361109 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1748 bp downstream
 SNP A/C A A A A A C A A C A A C A A
rs50080737
MGI SNP Detail		 Chr14:54361115 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1754 bp downstream
 SNP A/G A A A A A A G A A A A G A G A G
rs45973371
MGI SNP Detail		 Chr14:54361212 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1851 bp downstream
 SNP G/T G G G G G G T G G G G G G G G
rs3155470
MGI SNP Detail		 Chr14:54361315 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125530 1954 bp downstream
 SNP C/T C C C C C C C C C C C T C C C C C
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Showing SNP(s) 1 - 35 of 35
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory