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Mouse SNP Summary
Symbol
Name
ID 		Tssr125539
transcription start site region 125539
MGI:6053306

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Showing SNP(s) 1 - 47 of 47

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs46034919
MGI SNP Detail		 Chr14:54358880 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1700 bp upstream
 SNP A/T A A A A A A T A A A A T A T
rs47745077
MGI SNP Detail		 Chr14:54358997 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1583 bp upstream
 SNP A/G G G G G G A G G G G G G G G
rs45658873
MGI SNP Detail		 Chr14:54359091 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1489 bp upstream
 SNP A/G G G G G G G A G G G G G G G G
rs45861669
MGI SNP Detail		 Chr14:54359143 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1437 bp upstream
 SNP C/T T T T T T T C T T T T T T T T
rs3155465
MGI SNP Detail		 Chr14:54359177 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1403 bp upstream
 SNP A/G A A A A A G A A A A A G A A A A A
rs3155466
MGI SNP Detail		 Chr14:54359301 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1279 bp upstream
 SNP A/G G G G G G A G G G G G A G G G G G
rs3155467
MGI SNP Detail		 Chr14:54359391 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125532 within coordinates of
Tssr125539 1189 bp upstream
 SNP G/T T T T T T T G T T T G T T T G
rs3153544
MGI SNP Detail		 Chr14:54359432 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Rr292699 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1148 bp upstream
 SNP C/T C C C C C T T C C C C T C C C C C
rs3153545
MGI SNP Detail		 Chr14:54359621 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Rr292699 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125536 within coordinates of
Tssr125539 959 bp upstream
 SNP C/T C C C C C C T C C C C C T C C C C C
rs3153546
MGI SNP Detail		 Chr14:54359865 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 715 bp upstream
 SNP G/T T T T T T T G G T T T T G T T T T T
rs3153547
MGI SNP Detail		 Chr14:54359937 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 643 bp upstream
 SNP C/T T T T T T T C T T T T T C T T T T T
rs3153548
MGI SNP Detail		 Chr14:54359942 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 638 bp upstream
 SNP A/T A T A A A
rs3155468
MGI SNP Detail		 Chr14:54360074 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 506 bp upstream
 SNP A/G A A A A A A A G G A A A A G A A A A A
rs3155469
MGI SNP Detail		 Chr14:54360160 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 420 bp upstream
 SNP A/G G G G G G G G A A G G G G A G G G G G
rs3153549
MGI SNP Detail		 Chr14:54360189 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 391 bp upstream
 SNP C/T C C C C C C C T T C C C C T C C C C C
rs3153550
MGI SNP Detail		 Chr14:54360447 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 133 bp upstream
 SNP C/T T T T T T T T C C T T T T C T T T T T
rs3153551
MGI SNP Detail		 Chr14:54360506 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 74 bp upstream
 SNP A/C C C C C C C C A A C C C C A C C C C C
rs51050259
MGI SNP Detail		 Chr14:54360585 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 within coordinates of
 SNP A/G A A A A A A A A A A A A G A G
rs48584643
MGI SNP Detail		 Chr14:54360756 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 140 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs241777954
MGI SNP Detail		 Chr14:54360919 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 303 bp downstream
 SNP A/G G A
rs259347498
MGI SNP Detail		 Chr14:54360923 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 307 bp downstream
 SNP A/G G A
rs52351166
MGI SNP Detail		 Chr14:54360956 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 340 bp downstream
 SNP G/T T T T T T T T T T T T G T T T T T
rs249453355
MGI SNP Detail		 Chr14:54361030 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 414 bp downstream
 SNP A A A
rs48623125
MGI SNP Detail		 Chr14:54361038 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 422 bp downstream
 SNP A/G G G G G G G G G G G G A G G G G G
rs48689773
MGI SNP Detail		 Chr14:54361072 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 456 bp downstream
Tssr128533 within coordinates of
 SNP A/G G G G G G G A G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs47105690
MGI SNP Detail		 Chr14:54361079 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 463 bp downstream
Tssr128533 within coordinates of
 SNP C/G G G G G G G G G G G C G G G G G
rs50584009
MGI SNP Detail		 Chr14:54361109 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 493 bp downstream
 SNP A/C A A A A A C A A C A A C A A
rs50080737
MGI SNP Detail		 Chr14:54361115 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 499 bp downstream
 SNP A/G A A A A A A G A A A A G A G A G
rs45973371
MGI SNP Detail		 Chr14:54361212 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 596 bp downstream
 SNP G/T G G G G G G T G G G G G G G G
rs3155470
MGI SNP Detail		 Chr14:54361315 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 699 bp downstream
 SNP C/T C C C C C C C C C C C T C C C C C
rs3153552
MGI SNP Detail		 Chr14:54361366 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 750 bp downstream
 SNP A/G G G G G G G G G G G G A G G G G G
rs3155471
MGI SNP Detail		 Chr14:54361379 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 763 bp downstream
 SNP A/T A A A A A A A A A A A T A A A A A
rs3155472
MGI SNP Detail		 Chr14:54361451 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 835 bp downstream
 SNP A/G G G G G G G A G G G G A G G G G G
rs3155473
MGI SNP Detail		 Chr14:54361528 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 912 bp downstream
 SNP A/G G G G G G G G G G G G A G G G G G
rs48118311
MGI SNP Detail		 Chr14:54361879 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1263 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs3155474
MGI SNP Detail		 Chr14:54361888 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1272 bp downstream
 SNP G G G G G G
rs3153553
MGI SNP Detail		 Chr14:54361898 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1282 bp downstream
 SNP C/G C C C C C C G C C C C G C C G C C
rs3153554
MGI SNP Detail		 Chr14:54361906 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1290 bp downstream
 SNP C/T T T T T T T T T C T T T
rs3153555
MGI SNP Detail		 Chr14:54361927 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1311 bp downstream
 SNP A/T T T T T T T T A T T T T A T T T T T
rs3153556
MGI SNP Detail		 Chr14:54361983 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1367 bp downstream
 SNP A/T T T T T T T T T T T T A T T T T T
rs46632581
MGI SNP Detail		 Chr14:54362021 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1405 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs3155475
MGI SNP Detail		 Chr14:54362074 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1458 bp downstream
 SNP G G G G G
rs3153557
MGI SNP Detail		 Chr14:54362083 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1467 bp downstream
 SNP C C C C C C
rs3155476
MGI SNP Detail		 Chr14:54362085 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1469 bp downstream
 SNP C C C C C C
rs3155477
MGI SNP Detail		 Chr14:54362129 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1513 bp downstream
 SNP A/G G G G G G G G A G G G G A G G G G G
rs3155478
MGI SNP Detail		 Chr14:54362518 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1902 bp downstream
 SNP A/G A A A A A A A G A A A A G A A A G
rs47787267
MGI SNP Detail		 Chr14:54362612 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm30275 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125539 1996 bp downstream
 SNP A/G A A A A A A A A A A A G A A A A A
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Showing SNP(s) 1 - 47 of 47
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory