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Mouse SNP Summary
Symbol
Name
ID 		Tssr125541
transcription start site region 125541
MGI:6053308

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Showing SNP(s) 1 - 40 of 40

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs3153566
MGI SNP Detail		 Chr14:54374082 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1867 bp upstream
 SNP C/T T T T T T T T C C T T T T C C T C T T C
rs30688906
MGI SNP Detail		 Chr14:54374158 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1791 bp upstream
 SNP A/G G G G G G G G A G G G G G A A G G G G G
rs46245562
MGI SNP Detail		 Chr14:54374435 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1514 bp upstream
 SNP G/T G G G G G G G G G G G G T G T
rs3153567
MGI SNP Detail		 Chr14:54374483 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1466 bp upstream
 SNP A A A A A A
rs3153568
MGI SNP Detail		 Chr14:54374618 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1331 bp upstream
 SNP A/C A A A A A A A C A A A C A C A A C
rs3155488
MGI SNP Detail		 Chr14:54374671 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1278 bp upstream
 SNP A/G A A A A A A A G A A A A G A G A A G
rs46908010
MGI SNP Detail		 Chr14:54374736 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1213 bp upstream
 SNP C/T T T T T T T C T T T T T T T T
rs3155489
MGI SNP Detail		 Chr14:54374876 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1073 bp upstream
 SNP A/G G G G G G G G A G G G G G A G A G G A
rs46094236
MGI SNP Detail		 Chr14:54374936 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1013 bp upstream
 SNP A/T A A A A A A T A A A A A A A A
rs47436957
MGI SNP Detail		 Chr14:54375046 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 903 bp upstream
 SNP C/T C C C C C C C C C C C C T C T
rs50727158
MGI SNP Detail		 Chr14:54375319 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 630 bp upstream
 SNP G/T T T T T T T G T T T T T T T T
rs3155490
MGI SNP Detail		 Chr14:54375397 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 552 bp upstream
 SNP C/T T T T T T T T C C T T T T C T C T T C
rs48858857
MGI SNP Detail		 Chr14:54375423 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 526 bp upstream
 SNP C/T C C C C C C T C C C C C C C C
rs47853876
MGI SNP Detail		 Chr14:54375612 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 337 bp upstream
 SNP T T T T T T
rs52521864
MGI SNP Detail		 Chr14:54375731 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 218 bp upstream
Tssr128535 within coordinates of
 SNP C/T T T T T T T T C T T T T C T C T T C
rs49163072
MGI SNP Detail		 Chr14:54375868 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 81 bp upstream
 SNP C/T C C C C C C C T C C C C C T C C T
rs51846473
MGI SNP Detail		 Chr14:54375911 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 38 bp upstream
 SNP A/C C C C C C C C A C C C C A C C C C C
rs50140035
MGI SNP Detail		 Chr14:54376141 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 147 bp downstream
 SNP A/G G G G G G G G G G G G G A G G G G G
rs49723519
MGI SNP Detail		 Chr14:54376156 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 162 bp downstream
 SNP A/C C C C C C C C A C C C C A C A C C A
rs48421403
MGI SNP Detail		 Chr14:54376199 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 205 bp downstream
 SNP A/G G G G G G G G G G G G G A G G G G G
rs48709108
MGI SNP Detail		 Chr14:54376284 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 290 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs48428149
MGI SNP Detail		 Chr14:54376380 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 386 bp downstream
 SNP A/C C C C C C C C A C C C C A C A C C A
rs48097544
MGI SNP Detail		 Chr14:54376418 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 424 bp downstream
 SNP A/G G G G G G G G G G G G G A G G G G G
rs47788125
MGI SNP Detail		 Chr14:54376438 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 444 bp downstream
 SNP C/T T T T T T T C T T T T T T T T
rs49334751
MGI SNP Detail		 Chr14:54376450 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 456 bp downstream
 SNP A/G A G G G G G G G G G G A G A A G A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs46014790
MGI SNP Detail		 Chr14:54376457 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 463 bp downstream
 SNP A A A A A A
rs47886287
MGI SNP Detail		 Chr14:54376470 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 476 bp downstream
 SNP C/T C C C C C C C C C C C C T C T
rs45957651
MGI SNP Detail		 Chr14:54376485 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 491 bp downstream
 SNP C/T C C C C C C C T C C C C T C C C C C
rs47219079
MGI SNP Detail		 Chr14:54376561 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 567 bp downstream
 SNP C/T C C C C C T C C C
rs51590871
MGI SNP Detail		 Chr14:54376562 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 568 bp downstream
 SNP A A A A A A
rs3153569
MGI SNP Detail		 Chr14:54376626 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 632 bp downstream
 SNP C/T C C C C C C C C C C C C T C T C C T
rs47450521
MGI SNP Detail		 Chr14:54376648 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 654 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs3155491
MGI SNP Detail		 Chr14:54376868 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr299391 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 874 bp downstream
 SNP C/T C C C C C C C C C C C C T C T C C T
rs3021906
MGI SNP Detail		 Chr14:54376981 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 987 bp downstream
 SNP T T T T T
rs3021907
MGI SNP Detail		 Chr14:54377008 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1014 bp downstream
 SNP A A A A A
rs3021908
MGI SNP Detail		 Chr14:54377166 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1172 bp downstream
 SNP A A A A A A
rs3021910
MGI SNP Detail		 Chr14:54377398 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1404 bp downstream
 SNP G G G G G G
rs3023406
MGI SNP Detail		 Chr14:54377472 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1478 bp downstream
 SNP T T T
rs256699181
MGI SNP Detail		 Chr14:54377634 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1640 bp downstream
 SNP G/T T G
rs219667910
MGI SNP Detail		 Chr14:54377920 A430107P09Rik within coordinates of
A630038E17Rik within coordinates of
Gm43434 within coordinates of
Rr295541 within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr125541 1926 bp downstream
 SNP A/C A C
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Showing SNP(s) 1 - 40 of 40
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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