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Mouse SNP Summary
Symbol
Name
ID 		Tssr128540
transcription start site region 128540
MGI:6056307

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Showing SNP(s) 1 - 64 of 64

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SNP Density Heatmap
Chr14 from 54,386,856 bp to 54,390,867 bp
(4,012 bp)
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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs31325219
MGI SNP Detail		 Chr14:54386872 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1984 bp downstream
 SNP C/T T T C T T T
rs31279135
MGI SNP Detail		 Chr14:54386946 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1910 bp downstream
 SNP A/G A A G A
rs52183222
MGI SNP Detail		 Chr14:54386952 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1904 bp downstream
 SNP C C C
rs108150518
MGI SNP Detail		 Chr14:54386953 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1903 bp downstream
 SNP A A A A
rs52261542
MGI SNP Detail		 Chr14:54386972 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1884 bp downstream
 SNP A A A A A
rs50183566
MGI SNP Detail		 Chr14:54387044 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1812 bp downstream
 SNP G G G G G G
rs48322769
MGI SNP Detail		 Chr14:54387077 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1779 bp downstream
 SNP C/T C C C C C C C C C C C T C C C C
rs49397133
MGI SNP Detail		 Chr14:54387123 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1733 bp downstream
 SNP C/T C C C C C C C C C C T C C C
rs51052226
MGI SNP Detail		 Chr14:54387137 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1719 bp downstream
 SNP A/G A A A A A A A A A A A G A A A A A
rs3155517
MGI SNP Detail		 Chr14:54387184 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1672 bp downstream
 SNP C/T C C C C C C C C C C C C T C C C C C
rs51534982
MGI SNP Detail		 Chr14:54387213 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1643 bp downstream
 SNP A/G G G G G G G G G G G G G A G G G G G
rs47069732
MGI SNP Detail		 Chr14:54387330 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1526 bp downstream
 SNP C C C C C C
rs45686407
MGI SNP Detail		 Chr14:54387334 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1522 bp downstream
 SNP A A A A A A
rs3153592
MGI SNP Detail		 Chr14:54387354 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1502 bp downstream
 SNP C C C C C C
rs3153593
MGI SNP Detail		 Chr14:54387453 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1403 bp downstream
 SNP A/G A A A A A G A A A A G A A A A A
rs3155518
MGI SNP Detail		 Chr14:54387470 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1386 bp downstream
 SNP C C C C C
rs3155519
MGI SNP Detail		 Chr14:54387474 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1382 bp downstream
 SNP C/T C C C C C C C C C C T C C C C
rs46741160
MGI SNP Detail		 Chr14:54387671 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1185 bp downstream
 SNP A A A
rs46995698
MGI SNP Detail		 Chr14:54387702 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1154 bp downstream
 SNP C C C C
rs46197103
MGI SNP Detail		 Chr14:54387724 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1132 bp downstream
 SNP A A A A
rs50037723
MGI SNP Detail		 Chr14:54387747 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1109 bp downstream
 SNP C/T T T T C T
rs47901743
MGI SNP Detail		 Chr14:54387759 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1097 bp downstream
 SNP C C C C C C
rs49725767
MGI SNP Detail		 Chr14:54387779 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1077 bp downstream
 SNP G G G G G G
rs3153594
MGI SNP Detail		 Chr14:54387954 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 902 bp downstream
 SNP A A A A A
rs48087183
MGI SNP Detail		 Chr14:54388017 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 839 bp downstream
 SNP A/G A A A A A A G A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs47071207
MGI SNP Detail		 Chr14:54388038 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 818 bp downstream
 SNP C/G G G G G G G G G C G G G C G G C G
rs3153595
MGI SNP Detail		 Chr14:54388057 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 799 bp downstream
 SNP C/G G G G G G G G G G G G G C G G G G G
rs50352735
MGI SNP Detail		 Chr14:54388151 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 705 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs3155520
MGI SNP Detail		 Chr14:54388178 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 678 bp downstream
 SNP A/T A A A A A A A A A A A A T A A A A A
rs52134715
MGI SNP Detail		 Chr14:54388207 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 649 bp downstream
 SNP A/T T T T T T T T A T T T
rs50389601
MGI SNP Detail		 Chr14:54388375 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 481 bp downstream
 SNP A/T A A A A A A A A A A A T A A A A A
rs47936803
MGI SNP Detail		 Chr14:54388408 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 448 bp downstream
 SNP C C C C
rs51637680
MGI SNP Detail		 Chr14:54388422 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 434 bp downstream
 SNP T T T T
rs51184291
MGI SNP Detail		 Chr14:54388453 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 403 bp downstream
 SNP C/G C C C C C C C C G C C C C
rs50005057
MGI SNP Detail		 Chr14:54388457 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 399 bp downstream
 SNP A A A A
rs50382173
MGI SNP Detail		 Chr14:54388507 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 349 bp downstream
 SNP A/G G G G G G G G G G G G A G G G G G
rs47875167
MGI SNP Detail		 Chr14:54388529 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 327 bp downstream
 SNP A/G A A A A A A A A A A A G A A A A A
rs48838676
MGI SNP Detail		 Chr14:54388542 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 314 bp downstream
 SNP C C C C
rs46684710
MGI SNP Detail		 Chr14:54388571 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 285 bp downstream
 SNP A A A A
rs51162780
MGI SNP Detail		 Chr14:54388609 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 247 bp downstream
 SNP A A A A
rs50986901
MGI SNP Detail		 Chr14:54388673 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 183 bp downstream
 SNP C/T T T T T T T C T T T T T T T T
rs50834240
MGI SNP Detail		 Chr14:54388751 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 105 bp downstream
 SNP A/G A A A A A A G A A A A A A A A
rs51428895
MGI SNP Detail		 Chr14:54388973 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 106 bp upstream
 SNP A/G A A A A A A G A A A A A A A A
rs47695067
MGI SNP Detail		 Chr14:54389008 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 141 bp upstream
 SNP A/G G G G G G G G G G G G G A G A
rs46683607
MGI SNP Detail		 Chr14:54389050 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 183 bp upstream
 SNP G/T T T T T T T G T T T T T T T T
rs48367458
MGI SNP Detail		 Chr14:54389226 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 359 bp upstream
 SNP G/T G G G G G G T G G G G G G G G
rs49501319
MGI SNP Detail		 Chr14:54389512 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 645 bp upstream
 SNP T T T T
rs47562850
MGI SNP Detail		 Chr14:54389536 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 669 bp upstream
 SNP A/G G G G G G G G G G G G A G G G G G
rs49896366
MGI SNP Detail		 Chr14:54389544 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 677 bp upstream
 SNP C/T C C C C C C C C C C T C C C
rs30969062
MGI SNP Detail		 Chr14:54389594 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 727 bp upstream
 SNP A/T T T T T T T A T T T T T A T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs48182054
MGI SNP Detail		 Chr14:54389658 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 791 bp upstream
 SNP C/T C C C C C C C C C C C T C C C C C
rs3155522
MGI SNP Detail		 Chr14:54389792 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 925 bp upstream
 SNP A/C A A A A A A C A A A A C A C A A C
rs3155523
MGI SNP Detail		 Chr14:54389865 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 998 bp upstream
 SNP A A A A A
rs3155524
MGI SNP Detail		 Chr14:54389869 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1002 bp upstream
 SNP G G G G G
rs3153597
MGI SNP Detail		 Chr14:54389875 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1008 bp upstream
 SNP C/T C T
rs3719071
MGI SNP Detail		 Chr14:54390154 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1287 bp upstream
 SNP C/G G G G C G G G
rs3719591
MGI SNP Detail		 Chr14:54390209 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1342 bp upstream
 SNP C/T T T T C T T T
rs3719664
MGI SNP Detail		 Chr14:54390255 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1388 bp upstream
 SNP A/G A A A G A A A
rs3719759
MGI SNP Detail		 Chr14:54390302 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1435 bp upstream
 SNP G/T T T T G T T T
rs3720208
MGI SNP Detail		 Chr14:54390315 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1448 bp upstream
 SNP C/G C C C G C C C
rs3720354
MGI SNP Detail		 Chr14:54390392 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1525 bp upstream
 SNP G/T T T T G T T T
rs3720358
MGI SNP Detail		 Chr14:54390394 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1527 bp upstream
 SNP C/T T T T C T T T
rs3720874
MGI SNP Detail		 Chr14:54390426 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1559 bp upstream
 SNP A/G G G G A G G G
rs3153598
MGI SNP Detail		 Chr14:54390468 A430107P09Rik within coordinates of
Tcra within coordinates of
Tcrd within coordinates of
Tssr128540 1601 bp upstream
 SNP A/G A A A A A A G A A A A A G A A A A A
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Showing SNP(s) 1 - 64 of 64
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory